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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
59.6
nTPM
Monaco:
94.1
nTPM
Schmiedel:
49.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.6
HPA sample
nTPM
gdT-cell nTPM: 0.6
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.0
P10809_1007
0.0
P10809_1022
1.6
P10809_1041
0.0
P10809_1060
0.5
P10809_1077
0.5
P10809_1098
0.8
MAIT T-cell nTPM: 24.8
Samples: 6
Max nTPM: 33.1
Min nTPM: 8.3
P10809_1006
8.3
P10809_1024
33.1
P10809_1043
31.1
P10809_1062
16.1
P10809_1083
27.8
P10809_1097
32.4
Memory CD4 T-cell nTPM: 38.4
Samples: 6
Max nTPM: 50.6
Min nTPM: 28.5
P10809_1014
34.7
P10809_1026
47.2
P10809_1045
50.6
P10809_1064
28.5
P10809_1086
34.8
P10809_1113
34.7
Memory CD8 T-cell nTPM: 43.3
Samples: 5
Max nTPM: 82.8
Min nTPM: 23.9
P10809_1012
36.1
P10809_1027
23.9
P10809_1046
46.7
P10809_1065
82.8
P10809_1111
26.8
Naive CD4 T-cell nTPM: 42.7
Samples: 6
Max nTPM: 74.7
Min nTPM: 29.0
P10809_1015
29.0
P10809_1030
35.4
P10809_1049
74.7
P10809_1068
40.2
P10809_1085
42.8
P10809_1112
34.1
Naive CD8 T-cell nTPM: 25.1
Samples: 6
Max nTPM: 33.7
Min nTPM: 16.7
P10809_1016
24.5
P10809_1031
16.7
P10809_1050
33.7
P10809_1069
19.5
P10809_1087
24.5
P10809_1110
31.8
T-reg nTPM: 59.7
Samples: 6
Max nTPM: 88.2
Min nTPM: 32.2
P10809_1018
51.3
P10809_1037
70.6
P10809_1056
53.7
P10809_1075
32.2
P10809_1094
61.9
P10809_1106
88.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 85.8
Samples: 4
Max nTPM: 194.2
Min nTPM: 32.0
RHH5202_R3573
61.2
RHH5230_R3602
32.0
RHH5259_R3631
55.6
RHH5288_R3660
194.2
Effector memory CD8 T-cell nTPM: 51.6
Samples: 4
Max nTPM: 59.1
Min nTPM: 43.3
RHH5203_R3574
45.5
RHH5231_R3603
59.1
RHH5260_R3632
43.3
RHH5289_R3661
58.6
MAIT T-cell nTPM: 70.2
Samples: 4
Max nTPM: 179.8
Min nTPM: 12.0
RHH5233_R3605
26.3
RHH5205_R3576
12.0
RHH5262_R3634
62.5
RHH5297_R3663
179.8
Memory CD4 T-cell TFH nTPM: 94.1
Samples: 4
Max nTPM: 115.9
Min nTPM: 73.5
RHH5300_R3666
73.5
RHH5236_R3608
109.7
RHH5265_R3637
77.2
RHH5208_R3579
115.9
Memory CD4 T-cell Th1 nTPM: 56.9
Samples: 4
Max nTPM: 77.0
Min nTPM: 26.5
RHH5210_R3581
77.0
RHH5302_R3668
65.3
RHH5238_R3610
26.5
RHH5267_R3639
58.6
Memory CD4 T-cell Th1/Th17 nTPM: 90.7
Samples: 4
Max nTPM: 192.5
Min nTPM: 29.1
RHH5303_R3669
192.5
RHH5211_R3582
90.7
RHH5239_R3611
29.1
RHH5268_R3640
50.4
Memory CD4 T-cell Th17 nTPM: 62.1
Samples: 4
Max nTPM: 73.5
Min nTPM: 55.1
RHH5304_R3670
73.5
RHH5212_R3583
56.7
RHH5240_R3612
55.1
RHH5269_R3641
63.0
Memory CD4 T-cell Th2 nTPM: 81.1
Samples: 4
Max nTPM: 96.3
Min nTPM: 59.4
RHH5305_R3671
95.0
RHH5213_R3584
73.6
RHH5241_R3613
96.3
RHH5270_R3642
59.4
Naive CD4 T-cell nTPM: 62.0
Samples: 4
Max nTPM: 96.1
Min nTPM: 42.0
RHH5306_R3672
45.9
RHH5214_R3585
96.1
RHH5242_R3614
42.0
RHH5271_R3643
64.0
Naive CD8 T-cell nTPM: 48.7
Samples: 4
Max nTPM: 85.6
Min nTPM: 23.4
RHH5201_R3572
85.6
RHH5229_R3601
23.4
RHH5258_R3630
31.7
RHH5287_R3659
54.0
Non-Vd2 gdTCR nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5235_R3607
0.0
RHH5264_R3636
0.0
RHH5207_R3578
0.0
RHH5299_R3665
0.0
T-reg nTPM: 77.6
Samples: 4
Max nTPM: 108.4
Min nTPM: 62.8
RHH5301_R3667
62.8
RHH5237_R3609
108.4
RHH5266_R3638
67.9
RHH5209_R3580
71.2
Terminal effector memory CD4 T-cell nTPM: 8.0
Samples: 2
Max nTPM: 15.9
Min nTPM: 0.0
RHH5243_R3615
0.0
RHH5272_R3644
15.9
Terminal effector memory CD8 T-cell nTPM: 39.9
Samples: 4
Max nTPM: 98.8
Min nTPM: 15.1
RHH5232_R3604
23.6
RHH5204_R3575
98.8
RHH5261_R3633
15.1
RHH5296_R3662
22.1
Vd2 gdTCR nTPM: 0.5
Samples: 4
Max nTPM: 2.0
Min nTPM: 0.0
RHH5234_R3606
0.0
RHH5206_R3577
0.0
RHH5263_R3635
2.0
RHH5298_R3664
0.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
