MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.5 nTPM
HPA Brain:71.5 nTPM
GTEx:33.5 nTPM
FANTOM5:60.0 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:90.2 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.0
2219 Male, age 76, both hemispheres 70.3
1833 Male, age 53, unknown 69.2
1830 Male, age 51, unknown 65.3
2666 Male, age 74, left hemisphere 62.5
2411 Female, age 72, unknown 61.7
1870 Female, age 42, unknown 60.0
2019 Male, age 18, unknown 60.0
2828 Female, age 72, unknown 58.1
1827 Male, age 72, unknown 57.7
2586 Male, age 75, left hemisphere 45.7
Dorsal raphe nucleus
nTPM: 62.9
2016 Female, age 72, unknown 67.1
2047 Male, age 72, unknown 63.3
2750 Male, age 76, both hemispheres 63.0
1828 Male, age 53, unknown 61.3
2298 Female, age 72, unknown 59.8
Inferior colliculus
nTPM: 57.3
2849 Male, age 72, unknown 63.9
1848 Female, age 42, unknown 55.8
2097 Female, age 72, unknown 55.2
1890 Male, age 53, unknown 54.1
Median raphe nucleus
nTPM: 67.9
2220 Male, age 76, midline 67.9
Periaquaductal grey, anterior
nTPM: 57.3
1947 Male, age 18, unknown 65.4
2502 Female, age 75, unknown 54.9
1795 Male, age 51, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 61.8
2850 Male, age 76, both hemispheres 71.8
1840 Male, age 53, unknown 62.8
2464 Female, age 72, unknown 56.8
1831 Male, age 72, unknown 55.7
Periaquaductal grey, lateral
nTPM: 61.5
2140 Male, age 76, both hemispheres 65.5
2053 Male, age 18, unknown 59.7
2272 Male, age 74, both hemispheres 59.3
Pretectal area
nTPM: 63.5
2316 Male, age 76, right hemisphere 69.4
2667 Female, age 75, unknown 66.9
2224 Female, age 72, unknown 66.6
1944 Female, age 72, unknown 66.0
1815 Male, age 53, unknown 65.3
1816 Male, age 51, unknown 64.4
2273 Male, age 74, both hemispheres 64.1
1817 Female, age 42, unknown 62.2
2825 Male, age 18, unknown 60.2
2007 Male, age 72, unknown 58.4
2407 Male, age 75, both hemispheres 54.6
Red nucleus
nTPM: 60.5
2725 Female, age 75, unknown 71.3
1821 Female, age 72, unknown 64.5
2588 Male, age 74, left hemisphere 64.5
2503 Female, age 72, unknown 63.3
2823 Male, age 76, right hemisphere 63.1
1865 Male, age 51, unknown 59.5
1904 Male, age 53, unknown 57.7
2769 Male, age 72, unknown 57.6
1954 Female, age 42, unknown 57.3
2785 Male, age 18, unknown 56.7
2227 Male, age 72, unknown 56.2
2584 Male, age 75, left hemisphere 54.8
Substantia nigra
nTPM: 71.5
2241 Male, age 72, unknown 90.3
1916 Female, age 42, unknown 88.8
2409 Female, age 72, unknown 81.8
2699 Male, age 18, unknown 75.0
1851 Male, age 51, unknown 73.4
2590 Female, age 75, unknown 61.7
2583 Male, age 75, right hemisphere 61.1
2665 Male, age 74, both hemispheres 61.1
1889 Female, age 72, unknown 60.8
1941 Male, age 53, unknown 60.6
Superior colliculus
nTPM: 57.1
2587 Male, age 74, left hemisphere 62.3
1895 Male, age 76, right hemisphere 61.0
1796 Male, age 53, unknown 60.7
1913 Female, age 42, unknown 57.4
2087 Female, age 72, unknown 56.8
1839 Male, age 51, unknown 56.7
1995 Male, age 72, unknown 56.1
2261 Male, age 18, unknown 54.4
2668 Female, age 75, unknown 54.3
2664 Male, age 75, both hemispheres 51.4
Ventral tegmental area
nTPM: 65.0
1915 Female, age 42, unknown 73.8
2218 Male, age 76, both hemispheres 69.3
2021 Male, age 53, unknown 66.7
1942 Male, age 51, unknown 64.2
2410 Female, age 72, unknown 60.4
2223 Female, age 72, unknown 55.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.5
Samples: 139

Max nTPM: 70.7
Min nTPM: 18.6
Std nTPM: 8.6
Median nTPM: 32.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 70.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 60.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 52.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 52.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 49.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 47.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 46.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 46.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 46.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.0
FF:10158-103A5 76 years, female 60.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 23.9
Min nTPM: 15.3
Sample A Female 23.9
Sample B Female 19.3
Sample C Male 21.3
Sample D Male 15.3
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 22.6
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 20.9
Sample C Male 22.2
Sample D Male 22.6
Periaqueductal gray
nTPM: 20.7
Samples: 3

Max nTPM: 21.1
Min nTPM: 20.0
Sample B Female 20.0
Sample C Male 21.1
Sample D Male 21.1
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 22.8
Min nTPM: 17.7
Sample A Female 22.8
Sample B Female 17.7
Sample C Male 22.3
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 90.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.2
Samples: 4

Max nTPM: 96.4
Min nTPM: 83.6
Sample A Male 96.4
Sample B Male 92.6
Sample C Female 88.1
Sample D Female 83.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
100141843 Antisense, RP_071213_03_F05, Mouse strain C57BL/6J (56 days, male) 6.6
304 Antisense, RP_Baylor_253896, Mouse strain C57BL/6J (56 days, male) 0.0

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