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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.7
nTPM
Monaco:
51.2
nTPM
Schmiedel:
20.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
HPA sample
nTPM
Classical monocyte nTPM: 22.7
Samples: 6
Max nTPM: 55.9
Min nTPM: 5.0
P10809_1003
12.4
P10809_1020
26.2
P10809_1039
55.9
P10809_1058
15.3
P10809_1080
5.0
P10809_1107
21.3
Intermediate monocyte nTPM: 17.9
Samples: 6
Max nTPM: 22.9
Min nTPM: 9.6
P10809_1004
14.6
P10809_1023
19.7
P10809_1042
18.0
P10809_1061
22.4
P10809_1081
9.6
P10809_1108
22.9
Non-classical monocyte nTPM: 0.4
Samples: 5
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1005
0.6
P10809_1053
0.9
P10809_1072
0.0
P10809_1082
0.1
P10809_1109
0.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.2
Monaco sample
nTPM
Classical monocyte nTPM: 51.2
Samples: 4
Max nTPM: 67.3
Min nTPM: 28.3
RHH5313_R3680
28.3
RHH5221_R3593
45.0
RHH5250_R3622
64.2
RHH5279_R3651
67.3
Intermediate monocyte nTPM: 22.5
Samples: 4
Max nTPM: 35.0
Min nTPM: 11.9
RHH5314_R3681
30.6
RHH5222_R3594
11.9
RHH5251_R3623
12.3
RHH5280_R3652
35.0
Non-classical monocyte nTPM: 4.2
Samples: 4
Max nTPM: 7.0
Min nTPM: 1.7
RHH5315_R3682
1.9
RHH5223_R3595
1.7
RHH5252_R3624
7.0
RHH5281_R3653
6.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
