MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.0 nTPM
HPA Brain:71.1 nTPM
GTEx:36.0 nTPM
FANTOM5:139.1 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:25.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.2
2586 Male, age 75, left hemisphere 95.2
2411 Female, age 72, unknown 70.7
2828 Female, age 72, unknown 70.1
2019 Male, age 18, unknown 69.2
2666 Male, age 74, left hemisphere 68.7
1830 Male, age 51, unknown 65.7
1833 Male, age 53, unknown 64.9
1827 Male, age 72, unknown 63.6
1870 Female, age 42, unknown 61.8
2219 Male, age 76, both hemispheres 61.7
Dorsal raphe nucleus
nTPM: 60.8
2750 Male, age 76, both hemispheres 67.3
2047 Male, age 72, unknown 65.0
1828 Male, age 53, unknown 61.9
2016 Female, age 72, unknown 55.6
2298 Female, age 72, unknown 54.2
Inferior colliculus
nTPM: 56.2
2849 Male, age 72, unknown 58.5
1848 Female, age 42, unknown 57.3
1890 Male, age 53, unknown 56.5
2097 Female, age 72, unknown 52.4
Median raphe nucleus
nTPM: 56.6
2220 Male, age 76, midline 56.6
Periaquaductal grey, anterior
nTPM: 63.6
2502 Female, age 75, unknown 66.5
1947 Male, age 18, unknown 64.4
1795 Male, age 51, unknown 60.0
Periaquaductal grey, dorsal
nTPM: 53.5
2464 Female, age 72, unknown 61.1
1840 Male, age 53, unknown 57.5
1831 Male, age 72, unknown 50.9
2850 Male, age 76, both hemispheres 44.3
Periaquaductal grey, lateral
nTPM: 52.1
2053 Male, age 18, unknown 53.8
2272 Male, age 74, both hemispheres 52.1
2140 Male, age 76, both hemispheres 50.3
Pretectal area
nTPM: 61.6
2007 Male, age 72, unknown 70.4
2407 Male, age 75, both hemispheres 69.0
1817 Female, age 42, unknown 67.0
1815 Male, age 53, unknown 66.3
1816 Male, age 51, unknown 64.7
1944 Female, age 72, unknown 63.1
2667 Female, age 75, unknown 59.0
2825 Male, age 18, unknown 58.3
2316 Male, age 76, right hemisphere 57.4
2224 Female, age 72, unknown 53.2
2273 Male, age 74, both hemispheres 49.4
Red nucleus
nTPM: 66.9
2588 Male, age 74, left hemisphere 73.1
2584 Male, age 75, left hemisphere 71.4
2785 Male, age 18, unknown 70.9
1865 Male, age 51, unknown 70.5
2769 Male, age 72, unknown 68.3
1904 Male, age 53, unknown 67.8
2227 Male, age 72, unknown 67.8
2823 Male, age 76, right hemisphere 66.1
1821 Female, age 72, unknown 64.0
2503 Female, age 72, unknown 62.6
1954 Female, age 42, unknown 61.0
2725 Female, age 75, unknown 59.5
Substantia nigra
nTPM: 71.1
1916 Female, age 42, unknown 86.4
1851 Male, age 51, unknown 77.1
2583 Male, age 75, right hemisphere 76.9
2665 Male, age 74, both hemispheres 73.7
2699 Male, age 18, unknown 68.0
1941 Male, age 53, unknown 67.3
2409 Female, age 72, unknown 67.2
2590 Female, age 75, unknown 65.7
2241 Male, age 72, unknown 64.7
1889 Female, age 72, unknown 64.1
Superior colliculus
nTPM: 64.7
2664 Male, age 75, both hemispheres 79.3
2668 Female, age 75, unknown 77.2
2087 Female, age 72, unknown 66.7
1913 Female, age 42, unknown 65.2
2261 Male, age 18, unknown 62.9
1796 Male, age 53, unknown 62.7
1839 Male, age 51, unknown 61.4
1995 Male, age 72, unknown 59.4
1895 Male, age 76, right hemisphere 57.3
2587 Male, age 74, left hemisphere 55.2
Ventral tegmental area
nTPM: 65.3
2410 Female, age 72, unknown 76.3
2223 Female, age 72, unknown 66.0
1915 Female, age 42, unknown 65.0
1942 Male, age 51, unknown 62.1
2218 Male, age 76, both hemispheres 61.6
2021 Male, age 53, unknown 60.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.0
Samples: 183

Max nTPM: 65.4
Min nTPM: 22.7
Std nTPM: 6.6
Median nTPM: 35.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 52.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 52.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 50.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 49.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 48.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 48.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 47.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.1
FF:10158-103A5 76 years, female 139.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.8
Samples: 4

Max nTPM: 63.2
Min nTPM: 39.1
Sample A Female 60.5
Sample B Female 40.3
Sample C Male 63.2
Sample D Male 39.1
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 51.7
Min nTPM: 43.7
Sample A Female 47.6
Sample B Female 43.7
Sample C Male 51.7
Sample D Male 44.5
Periaqueductal gray
nTPM: 44.1
Samples: 3

Max nTPM: 49.4
Min nTPM: 39.6
Sample B Female 43.2
Sample C Male 49.4
Sample D Male 39.6
Superior colliculi
nTPM: 45.9
Samples: 4

Max nTPM: 52.5
Min nTPM: 32.8
Sample A Female 48.1
Sample B Female 32.8
Sample C Male 50.2
Sample D Male 52.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 23.6
Sample A Male 27.7
Sample B Male 26.5
Sample C Female 23.6
Sample D Female 25.1

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