MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA Brain:17.7 nTPM
GTEx:26.4 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:25.1 nTPM
Mouse:92.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
2411 Female, age 72, unknown 18.3
1870 Female, age 42, unknown 15.5
1827 Male, age 72, unknown 15.2
2019 Male, age 18, unknown 14.5
2219 Male, age 76, both hemispheres 13.4
1830 Male, age 51, unknown 12.7
1833 Male, age 53, unknown 12.3
2828 Female, age 72, unknown 11.8
2666 Male, age 74, left hemisphere 9.9
2586 Male, age 75, left hemisphere 9.1
Dorsal raphe nucleus
nTPM: 16.4
2298 Female, age 72, unknown 20.9
2750 Male, age 76, both hemispheres 17.9
1828 Male, age 53, unknown 14.7
2047 Male, age 72, unknown 14.6
2016 Female, age 72, unknown 14.0
Inferior colliculus
nTPM: 13.8
2097 Female, age 72, unknown 17.8
1890 Male, age 53, unknown 14.2
1848 Female, age 42, unknown 12.8
2849 Male, age 72, unknown 10.3
Median raphe nucleus
nTPM: 17.7
2220 Male, age 76, midline 17.7
Periaquaductal grey, anterior
nTPM: 15.2
2502 Female, age 75, unknown 16.2
1947 Male, age 18, unknown 15.8
1795 Male, age 51, unknown 13.6
Periaquaductal grey, dorsal
nTPM: 14.6
2850 Male, age 76, both hemispheres 15.7
1840 Male, age 53, unknown 15.2
2464 Female, age 72, unknown 15.0
1831 Male, age 72, unknown 12.4
Periaquaductal grey, lateral
nTPM: 15.0
2272 Male, age 74, both hemispheres 15.4
2053 Male, age 18, unknown 15.3
2140 Male, age 76, both hemispheres 14.4
Pretectal area
nTPM: 15.0
2007 Male, age 72, unknown 17.2
1944 Female, age 72, unknown 16.3
2273 Male, age 74, both hemispheres 16.3
2224 Female, age 72, unknown 16.0
1816 Male, age 51, unknown 15.6
1815 Male, age 53, unknown 15.5
1817 Female, age 42, unknown 15.2
2667 Female, age 75, unknown 14.9
2316 Male, age 76, right hemisphere 13.6
2825 Male, age 18, unknown 12.8
2407 Male, age 75, both hemispheres 12.1
Red nucleus
nTPM: 13.4
1821 Female, age 72, unknown 15.3
1954 Female, age 42, unknown 15.2
2725 Female, age 75, unknown 15.0
1865 Male, age 51, unknown 14.9
1904 Male, age 53, unknown 14.8
2503 Female, age 72, unknown 13.7
2785 Male, age 18, unknown 13.3
2823 Male, age 76, right hemisphere 13.2
2769 Male, age 72, unknown 12.8
2227 Male, age 72, unknown 12.2
2588 Male, age 74, left hemisphere 10.2
2584 Male, age 75, left hemisphere 10.1
Substantia nigra
nTPM: 15.6
2241 Male, age 72, unknown 21.1
2409 Female, age 72, unknown 18.5
1851 Male, age 51, unknown 17.8
1916 Female, age 42, unknown 16.9
1889 Female, age 72, unknown 16.1
1941 Male, age 53, unknown 15.8
2590 Female, age 75, unknown 13.2
2665 Male, age 74, both hemispheres 12.9
2699 Male, age 18, unknown 12.3
2583 Male, age 75, right hemisphere 11.8
Superior colliculus
nTPM: 13.7
2261 Male, age 18, unknown 16.6
1895 Male, age 76, right hemisphere 15.6
1913 Female, age 42, unknown 15.4
2087 Female, age 72, unknown 14.0
1995 Male, age 72, unknown 13.9
2587 Male, age 74, left hemisphere 13.8
2668 Female, age 75, unknown 13.1
1839 Male, age 51, unknown 12.9
1796 Male, age 53, unknown 12.8
2664 Male, age 75, both hemispheres 8.4
Ventral tegmental area
nTPM: 14.8
2410 Female, age 72, unknown 17.4
2218 Male, age 76, both hemispheres 15.5
1915 Female, age 42, unknown 14.9
2223 Female, age 72, unknown 14.2
2021 Male, age 53, unknown 13.9
1942 Male, age 51, unknown 13.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.4
Samples: 139

Max nTPM: 45.6
Min nTPM: 17.0
Std nTPM: 5.8
Median nTPM: 25.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 45.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 43.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 41.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 39.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 39.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 39.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 37.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 37.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.8
FF:10158-103A5 76 years, female 15.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 34.7
Min nTPM: 14.5
Sample A Female 34.7
Sample B Female 26.8
Sample C Male 24.4
Sample D Male 14.5
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 23.6
Min nTPM: 18.9
Sample A Female 23.6
Sample B Female 21.8
Sample C Male 20.3
Sample D Male 18.9
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 22.5
Min nTPM: 18.7
Sample B Female 19.4
Sample C Male 22.5
Sample D Male 18.7
Superior colliculi
nTPM: 23.3
Samples: 4

Max nTPM: 27.8
Min nTPM: 19.2
Sample A Female 26.7
Sample B Female 27.8
Sample C Male 19.6
Sample D Male 19.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 92.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.8
Samples: 4

Max nTPM: 100.0
Min nTPM: 89.6
Sample A Male 89.6
Sample B Male 91.8
Sample C Female 89.8
Sample D Female 100.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
1649 Antisense, RP_040604_01_C03, Mouse strain C57BL/6J (56 days, male) 0.3
1650 Antisense, RP_040604_01_C03, Mouse strain C57BL/6J (56 days, male) 0.2

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