MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.0 nTPM
HPA Brain:1.8 nTPM
GTEx:2.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.8
1833 Male, age 53, unknown 2.5
2666 Male, age 74, left hemisphere 2.3
1830 Male, age 51, unknown 2.1
2411 Female, age 72, unknown 2.0
2828 Female, age 72, unknown 1.9
2219 Male, age 76, both hemispheres 1.8
1870 Female, age 42, unknown 1.6
2019 Male, age 18, unknown 1.5
1827 Male, age 72, unknown 1.1
2586 Male, age 75, left hemisphere 1.0
Dorsal raphe nucleus
nTPM: 1.7
2016 Female, age 72, unknown 2.2
2750 Male, age 76, both hemispheres 2.0
1828 Male, age 53, unknown 1.7
2047 Male, age 72, unknown 1.5
2298 Female, age 72, unknown 1.2
Inferior colliculus
nTPM: 1.4
2097 Female, age 72, unknown 1.6
1848 Female, age 42, unknown 1.5
2849 Male, age 72, unknown 1.4
1890 Male, age 53, unknown 1.3
Median raphe nucleus
nTPM: 1.8
2220 Male, age 76, midline 1.8
Periaquaductal grey, anterior
nTPM: 1.6
1795 Male, age 51, unknown 1.9
1947 Male, age 18, unknown 1.9
2502 Female, age 75, unknown 0.9
Periaquaductal grey, dorsal
nTPM: 1.4
2464 Female, age 72, unknown 1.8
1840 Male, age 53, unknown 1.3
2850 Male, age 76, both hemispheres 1.3
1831 Male, age 72, unknown 1.2
Periaquaductal grey, lateral
nTPM: 1.8
2272 Male, age 74, both hemispheres 1.9
2053 Male, age 18, unknown 1.8
2140 Male, age 76, both hemispheres 1.7
Pretectal area
nTPM: 1.5
2667 Female, age 75, unknown 2.8
2825 Male, age 18, unknown 1.8
1815 Male, age 53, unknown 1.6
2273 Male, age 74, both hemispheres 1.6
2224 Female, age 72, unknown 1.5
2316 Male, age 76, right hemisphere 1.5
2407 Male, age 75, both hemispheres 1.5
1816 Male, age 51, unknown 1.2
1817 Female, age 42, unknown 1.2
2007 Male, age 72, unknown 1.2
1944 Female, age 72, unknown 1.0
Red nucleus
nTPM: 1.7
2823 Male, age 76, right hemisphere 3.0
2785 Male, age 18, unknown 2.3
2588 Male, age 74, left hemisphere 2.1
2769 Male, age 72, unknown 1.9
2227 Male, age 72, unknown 1.8
2503 Female, age 72, unknown 1.8
2725 Female, age 75, unknown 1.7
1865 Male, age 51, unknown 1.5
1904 Male, age 53, unknown 1.5
1954 Female, age 42, unknown 1.4
2584 Male, age 75, left hemisphere 1.1
1821 Female, age 72, unknown 0.8
Substantia nigra
nTPM: 1.5
2241 Male, age 72, unknown 2.9
2699 Male, age 18, unknown 2.1
2583 Male, age 75, right hemisphere 1.8
1889 Female, age 72, unknown 1.6
1941 Male, age 53, unknown 1.6
2590 Female, age 75, unknown 1.6
2665 Male, age 74, both hemispheres 1.6
1851 Male, age 51, unknown 1.3
1916 Female, age 42, unknown 0.8
2409 Female, age 72, unknown 0.2
Superior colliculus
nTPM: 1.7
1913 Female, age 42, unknown 3.0
2587 Male, age 74, left hemisphere 2.3
2087 Female, age 72, unknown 2.0
1839 Male, age 51, unknown 1.9
1895 Male, age 76, right hemisphere 1.9
1995 Male, age 72, unknown 1.7
2664 Male, age 75, both hemispheres 1.6
1796 Male, age 53, unknown 1.4
2668 Female, age 75, unknown 1.2
2261 Male, age 18, unknown 0.4
Ventral tegmental area
nTPM: 1.6
1915 Female, age 42, unknown 2.2
2223 Female, age 72, unknown 1.9
2021 Male, age 53, unknown 1.5
2410 Female, age 72, unknown 1.5
1942 Male, age 51, unknown 1.4
2218 Male, age 76, both hemispheres 1.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.0
Samples: 139

Max nTPM: 11.0
Min nTPM: 0.3
Std nTPM: 1.4
Median nTPM: 1.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 11.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 6.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 5.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 4.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 4.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 4.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 4.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3.9
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