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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
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Retina
Brain methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:616.6 nTPM
GTEx:616.6 nTPM
FANTOM5:688.6 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

616.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 616.6
Samples: 105

Max nTPM: 1060.7
Min nTPM: 449.0
Std nTPM: 101.6
Median nTPM:
237_1 82 years, male 1060.7
218_1 71 years, female 945.4
375_1 74 years, female 899.9
347_1 72 years, male 885.7
490_1 67 years, female 827.3
35_1 74 years, female 791.2
307_1 66 years, female 773.7
386_1 76 years, male 748.0
379_1 60 years, male 738.1
229_1 69 years, female 737.7
415_1 77 years, female 732.0
243_1 75 years, male 725.4
447_1 81 years, male 723.5
389_1 86 years, female 723.1
246_1 77 years, male 703.5
316_1 62 years, male 703.0
172_1 72 years, female 701.6
321_1 62 years, female 696.3
313_1 79 years, female 692.9
319_1 81 years, male 689.6
311_1 78 years, male 684.1
217_1 76 years, male 673.6
352_1 62 years, male 670.7
173_1 67 years, male 664.6
265_1 87 years, male 663.7
324_1 76 years, male 659.4
355_1 70 years, female 654.0
42_1 85 years, male 653.7
126_1 63 years, male 653.1
322_1 76 years, male 651.8
414_1 84 years, female 650.0
396_1 62 years, male 648.5
384_1 83 years, male 648.0
377_1 82 years, female 644.7
466_1 57 years, female 641.3
137_1 83 years, male 639.3
354_1 81 years, female 637.9
468_1 89 years, male 637.3
526_1 61 years, male 636.7
266_1 85 years, male 630.7
335_1 73 years, female 630.7
349_1 83 years, male 629.2
6_1 73 years, female 627.3
117_1 61 years, male 626.7
495_1 57 years, female 623.8
518_1 75 years, female 621.3
189_1 76 years, male 620.6
99_1 64 years, male 619.2
350_1 84 years, female 618.3
499_1 55 years, female 614.1
425_1 59 years, female 604.8
376_1 75 years, female 602.1
315_1 62 years, female 601.9
394_1 75 years, female 598.4
405_1 91 years, male 594.1
317_1 60 years, male 591.2
177_1 74 years, male 589.0
348_1 84 years, male 588.5
43_1 64 years, female 583.7
142_1 61 years, female 582.8
480_1 63 years, male 581.9
286_1 68 years, female 580.7
293_1 68 years, female 579.6
491_1 89 years, female 578.5
292_1 71 years, male 576.7
145_1 84 years, male 573.9
163_1 78 years, male 572.0
406_1 79 years, male 569.5
318_1 68 years, male 569.0
353_1 82 years, female 567.1
17_1 71 years, male 564.8
320_1 89 years, female 559.5
251_1 78 years, male 558.6
503_1 68 years, male 558.0
291_1 76 years, male 555.6
314_1 67 years, male 553.3
308_1 70 years, female 549.0
81_1 67 years, male 545.1
162_1 79 years, female 544.5
288_1 66 years, female 543.8
4_1 88 years, female 540.9
264_1 73 years, female 540.3
413_1 59 years, female 538.7
115_1 83 years, male 536.7
119_1 70 years, female 533.5
295_1 61 years, female 533.4
120_1 70 years, female 533.3
452_1 88 years, female 532.2
2_1 77 years, female 531.0
254_1 77 years, female 520.4
351_1 91 years, male 519.7
506_1 65 years, male 518.7
139_1 64 years, female 512.0
404_1 82 years, female 512.0
153_1 70 years, female 510.7
356_1 87 years, female 504.8
32_1 67 years, male 502.7
18_1 88 years, male 493.6
517_1 88 years, male 491.9
501_1 88 years, male 488.3
9_1 66 years, female 485.5
89_1 63 years, male 483.0
41_1 94 years, female 481.1
109_1 81 years, female 458.1
149_1 88 years, male 449.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

688.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 688.6
FF:10030-101E3 24-65 years, mixed 688.6

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