MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA Brain:34.1 nTPM
GTEx:3.2 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:36.7 nTPM
Mouse:28.2 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2019 Male, age 18, unknown 50.4
2219 Male, age 76, both hemispheres 32.6
2666 Male, age 74, left hemisphere 28.4
1827 Male, age 72, unknown 26.7
2586 Male, age 75, left hemisphere 25.5
1833 Male, age 53, unknown 21.3
2828 Female, age 72, unknown 21.3
2411 Female, age 72, unknown 20.9
1830 Male, age 51, unknown 19.9
1870 Female, age 42, unknown 18.0
Dorsal raphe nucleus
nTPM: 20.8
1828 Male, age 53, unknown 26.9
2047 Male, age 72, unknown 23.4
2298 Female, age 72, unknown 20.7
2750 Male, age 76, both hemispheres 19.2
2016 Female, age 72, unknown 14.1
Inferior colliculus
nTPM: 30.6
2097 Female, age 72, unknown 37.5
1848 Female, age 42, unknown 30.9
1890 Male, age 53, unknown 29.2
2849 Male, age 72, unknown 24.7
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 28.1
1795 Male, age 51, unknown 25.2
2502 Female, age 75, unknown 24.8
Periaquaductal grey, dorsal
nTPM: 19.4
2464 Female, age 72, unknown 22.1
1831 Male, age 72, unknown 19.4
1840 Male, age 53, unknown 19.4
2850 Male, age 76, both hemispheres 16.6
Periaquaductal grey, lateral
nTPM: 17.4
2140 Male, age 76, both hemispheres 19.1
2272 Male, age 74, both hemispheres 16.8
2053 Male, age 18, unknown 16.4
Pretectal area
nTPM: 34.1
1817 Female, age 42, unknown 54.8
2007 Male, age 72, unknown 51.9
1816 Male, age 51, unknown 48.2
1944 Female, age 72, unknown 45.2
2667 Female, age 75, unknown 36.0
1815 Male, age 53, unknown 32.1
2407 Male, age 75, both hemispheres 29.7
2316 Male, age 76, right hemisphere 21.2
2224 Female, age 72, unknown 19.9
2273 Male, age 74, both hemispheres 18.4
2825 Male, age 18, unknown 17.6
Red nucleus
nTPM: 24.8
2785 Male, age 18, unknown 41.0
1821 Female, age 72, unknown 31.8
2823 Male, age 76, right hemisphere 25.8
1954 Female, age 42, unknown 25.4
1865 Male, age 51, unknown 24.4
2584 Male, age 75, left hemisphere 24.4
2227 Male, age 72, unknown 22.9
2769 Male, age 72, unknown 22.7
2588 Male, age 74, left hemisphere 21.7
2503 Female, age 72, unknown 20.9
1904 Male, age 53, unknown 19.3
2725 Female, age 75, unknown 17.1
Substantia nigra
nTPM: 23.6
1941 Male, age 53, unknown 40.0
1889 Female, age 72, unknown 39.7
1916 Female, age 42, unknown 25.9
1851 Male, age 51, unknown 22.7
2665 Male, age 74, both hemispheres 22.7
2241 Male, age 72, unknown 21.1
2409 Female, age 72, unknown 19.9
2590 Female, age 75, unknown 16.5
2583 Male, age 75, right hemisphere 16.4
2699 Male, age 18, unknown 11.3
Superior colliculus
nTPM: 29.0
2668 Female, age 75, unknown 47.2
1895 Male, age 76, right hemisphere 39.7
2087 Female, age 72, unknown 37.7
2664 Male, age 75, both hemispheres 29.4
2261 Male, age 18, unknown 27.3
1796 Male, age 53, unknown 26.1
1839 Male, age 51, unknown 24.1
1913 Female, age 42, unknown 20.3
1995 Male, age 72, unknown 19.8
2587 Male, age 74, left hemisphere 18.0
Ventral tegmental area
nTPM: 20.2
2218 Male, age 76, both hemispheres 25.0
2410 Female, age 72, unknown 24.5
1915 Female, age 42, unknown 19.9
2223 Female, age 72, unknown 19.8
1942 Male, age 51, unknown 18.8
2021 Male, age 53, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.2
Samples: 139

Max nTPM: 22.0
Min nTPM: 0.3
Std nTPM: 3.0
Median nTPM: 2.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 12.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 11.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 9.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 8.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 8.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 8.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 7.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 25.3
Min nTPM: 9.2
Sample A Female 25.3
Sample B Female 11.1
Sample C Male 18.0
Sample D Male 9.2
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 50.8
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 14.8
Sample C Male 50.8
Sample D Male 39.3
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 22.4
Min nTPM: 14.8
Sample B Female 15.7
Sample C Male 22.4
Sample D Male 14.8
Superior colliculi
nTPM: 36.8
Samples: 4

Max nTPM: 53.8
Min nTPM: 15.7
Sample A Female 37.7
Sample B Female 15.7
Sample C Male 53.8
Sample D Male 39.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 34.0
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 29.2
Sample C Female 34.0
Sample D Female 29.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69863261 Antisense, RP_050331_04_E04, Mouse strain C57BL/6J (56 days, male) 3.2

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