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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1398.3
nTPM
HPA Brain:
644.3
nTPM
GTEx:
1398.3
nTPM
FANTOM5:
541.2
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
644.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 532.8
1827
Male, age 72, unknown
638.3
1870
Female, age 42, unknown
598.2
2411
Female, age 72, unknown
581.2
2019
Male, age 18, unknown
563.8
2666
Male, age 74, left hemisphere
557.6
1833
Male, age 53, unknown
511.4
2828
Female, age 72, unknown
509.0
2219
Male, age 76, both hemispheres
507.8
1830
Male, age 51, unknown
476.0
2586
Male, age 75, left hemisphere
384.8
Dorsal raphe nucleus nTPM: 537.0
2298
Female, age 72, unknown
665.4
2750
Male, age 76, both hemispheres
584.9
2047
Male, age 72, unknown
550.7
1828
Male, age 53, unknown
499.1
2016
Female, age 72, unknown
384.8
Inferior colliculus nTPM: 566.0
2097
Female, age 72, unknown
621.3
1848
Female, age 42, unknown
583.8
1890
Male, age 53, unknown
555.5
2849
Male, age 72, unknown
503.4
Median raphe nucleus nTPM: 620.8
2220
Male, age 76, midline
620.8
Periaquaductal grey, anterior nTPM: 575.6
1947
Male, age 18, unknown
605.2
2502
Female, age 75, unknown
595.9
1795
Male, age 51, unknown
525.7
Periaquaductal grey, dorsal nTPM: 492.0
2850
Male, age 76, both hemispheres
553.2
1840
Male, age 53, unknown
484.4
1831
Male, age 72, unknown
476.1
2464
Female, age 72, unknown
454.5
Periaquaductal grey, lateral nTPM: 483.2
2272
Male, age 74, both hemispheres
519.3
2053
Male, age 18, unknown
492.9
2140
Male, age 76, both hemispheres
437.5
Pretectal area nTPM: 644.3
1944
Female, age 72, unknown
850.4
1816
Male, age 51, unknown
848.9
1817
Female, age 42, unknown
821.2
2007
Male, age 72, unknown
809.5
1815
Male, age 53, unknown
677.3
2224
Female, age 72, unknown
626.8
2273
Male, age 74, both hemispheres
549.2
2667
Female, age 75, unknown
547.5
2825
Male, age 18, unknown
473.1
2407
Male, age 75, both hemispheres
465.9
2316
Male, age 76, right hemisphere
417.5
Red nucleus nTPM: 553.1
2725
Female, age 75, unknown
746.6
1821
Female, age 72, unknown
652.7
2785
Male, age 18, unknown
605.9
1865
Male, age 51, unknown
601.2
2503
Female, age 72, unknown
552.3
1954
Female, age 42, unknown
532.6
2823
Male, age 76, right hemisphere
530.5
2588
Male, age 74, left hemisphere
521.0
1904
Male, age 53, unknown
507.6
2769
Male, age 72, unknown
485.6
2227
Male, age 72, unknown
476.3
2584
Male, age 75, left hemisphere
424.9
Substantia nigra nTPM: 605.9
1889
Female, age 72, unknown
835.0
1941
Male, age 53, unknown
812.3
1916
Female, age 42, unknown
726.4
1851
Male, age 51, unknown
621.5
2241
Male, age 72, unknown
610.5
2699
Male, age 18, unknown
538.6
2665
Male, age 74, both hemispheres
502.3
2590
Female, age 75, unknown
492.8
2409
Female, age 72, unknown
470.5
2583
Male, age 75, right hemisphere
448.9
Superior colliculus nTPM: 552.1
2087
Female, age 72, unknown
676.2
2587
Male, age 74, left hemisphere
661.2
2261
Male, age 18, unknown
620.0
1895
Male, age 76, right hemisphere
584.5
1796
Male, age 53, unknown
568.8
1913
Female, age 42, unknown
557.8
2668
Female, age 75, unknown
526.7
1995
Male, age 72, unknown
483.3
1839
Male, age 51, unknown
478.3
2664
Male, age 75, both hemispheres
364.5
Ventral tegmental area nTPM: 551.8
2218
Male, age 76, both hemispheres
681.0
1915
Female, age 42, unknown
612.1
2410
Female, age 72, unknown
598.1
2223
Female, age 72, unknown
515.4
1942
Male, age 51, unknown
479.2
2021
Male, age 53, unknown
424.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1398.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1398.3
Samples: 139
Max nTPM: 3402.0
Min nTPM: 843.5
Std nTPM: 347.5
Median nTPM: 1356.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3402.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3001.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2340.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2279.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2265.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2149.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1980.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1844.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1818.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1814.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1811.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1802.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1785.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1754.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1736.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1684.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1660.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1647.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1646.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1634.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1633.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1628.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1611.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1611.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1606.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1574.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1565.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1559.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1553.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1550.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1546.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1529.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1528.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1523.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1520.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1505.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1500.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1481.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1479.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
1473.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1467.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1464.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1462.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1460.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1460.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1460.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1456.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1449.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1445.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1444.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1444.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1442.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1428.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1427.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1418.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1417.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1417.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
1413.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1410.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1408.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1401.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1397.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1395.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1391.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1391.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1382.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1362.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1359.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1357.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1356.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1354.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1354.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1347.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1329.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1328.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1327.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1323.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1317.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1316.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1315.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1314.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1302.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1295.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1292.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1286.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1285.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1282.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1278.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1273.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1266.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1264.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1254.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1254.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1248.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1243.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1241.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1236.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1232.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1226.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1220.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1220.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1212.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1208.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1195.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1195.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1190.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1188.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1181.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1180.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1173.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1162.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
1156.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1148.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1147.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1130.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1125.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1119.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1100.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1085.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1074.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1070.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1064.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1055.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1036.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1033.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1027.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1023.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1009.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
1008.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1003.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
996.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
994.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
991.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
980.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
966.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
957.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
952.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
890.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
843.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.