MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1451.7 nTPM
HPA Brain:644.3 nTPM
GTEx:1451.7 nTPM
FANTOM5:541.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 644.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 532.8
1827 Male, age 72, unknown 638.3
1870 Female, age 42, unknown 598.2
2411 Female, age 72, unknown 581.2
2019 Male, age 18, unknown 563.8
2666 Male, age 74, left hemisphere 557.6
1833 Male, age 53, unknown 511.4
2828 Female, age 72, unknown 509.0
2219 Male, age 76, both hemispheres 507.8
1830 Male, age 51, unknown 476.0
2586 Male, age 75, left hemisphere 384.8
Dorsal raphe nucleus
nTPM: 537.0
2298 Female, age 72, unknown 665.4
2750 Male, age 76, both hemispheres 584.9
2047 Male, age 72, unknown 550.7
1828 Male, age 53, unknown 499.1
2016 Female, age 72, unknown 384.8
Inferior colliculus
nTPM: 566.0
2097 Female, age 72, unknown 621.3
1848 Female, age 42, unknown 583.8
1890 Male, age 53, unknown 555.5
2849 Male, age 72, unknown 503.4
Median raphe nucleus
nTPM: 620.8
2220 Male, age 76, midline 620.8
Periaquaductal grey, anterior
nTPM: 575.6
1947 Male, age 18, unknown 605.2
2502 Female, age 75, unknown 595.9
1795 Male, age 51, unknown 525.7
Periaquaductal grey, dorsal
nTPM: 492.0
2850 Male, age 76, both hemispheres 553.2
1840 Male, age 53, unknown 484.4
1831 Male, age 72, unknown 476.1
2464 Female, age 72, unknown 454.5
Periaquaductal grey, lateral
nTPM: 483.2
2272 Male, age 74, both hemispheres 519.3
2053 Male, age 18, unknown 492.9
2140 Male, age 76, both hemispheres 437.5
Pretectal area
nTPM: 644.3
1944 Female, age 72, unknown 850.4
1816 Male, age 51, unknown 848.9
1817 Female, age 42, unknown 821.2
2007 Male, age 72, unknown 809.5
1815 Male, age 53, unknown 677.3
2224 Female, age 72, unknown 626.8
2273 Male, age 74, both hemispheres 549.2
2667 Female, age 75, unknown 547.5
2825 Male, age 18, unknown 473.1
2407 Male, age 75, both hemispheres 465.9
2316 Male, age 76, right hemisphere 417.5
Red nucleus
nTPM: 553.1
2725 Female, age 75, unknown 746.6
1821 Female, age 72, unknown 652.7
2785 Male, age 18, unknown 605.9
1865 Male, age 51, unknown 601.2
2503 Female, age 72, unknown 552.3
1954 Female, age 42, unknown 532.6
2823 Male, age 76, right hemisphere 530.5
2588 Male, age 74, left hemisphere 521.0
1904 Male, age 53, unknown 507.6
2769 Male, age 72, unknown 485.6
2227 Male, age 72, unknown 476.3
2584 Male, age 75, left hemisphere 424.9
Substantia nigra
nTPM: 605.9
1889 Female, age 72, unknown 835.0
1941 Male, age 53, unknown 812.3
1916 Female, age 42, unknown 726.4
1851 Male, age 51, unknown 621.5
2241 Male, age 72, unknown 610.5
2699 Male, age 18, unknown 538.6
2665 Male, age 74, both hemispheres 502.3
2590 Female, age 75, unknown 492.8
2409 Female, age 72, unknown 470.5
2583 Male, age 75, right hemisphere 448.9
Superior colliculus
nTPM: 552.1
2087 Female, age 72, unknown 676.2
2587 Male, age 74, left hemisphere 661.2
2261 Male, age 18, unknown 620.0
1895 Male, age 76, right hemisphere 584.5
1796 Male, age 53, unknown 568.8
1913 Female, age 42, unknown 557.8
2668 Female, age 75, unknown 526.7
1995 Male, age 72, unknown 483.3
1839 Male, age 51, unknown 478.3
2664 Male, age 75, both hemispheres 364.5
Ventral tegmental area
nTPM: 551.8
2218 Male, age 76, both hemispheres 681.0
1915 Female, age 42, unknown 612.1
2410 Female, age 72, unknown 598.1
2223 Female, age 72, unknown 515.4
1942 Male, age 51, unknown 479.2
2021 Male, age 53, unknown 424.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1451.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1451.7
Samples: 183

Max nTPM: 3347.5
Min nTPM: 874.2
Std nTPM: 334.6
Median nTPM: 1431.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 3347.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 3039.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2311.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2266.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 2142.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 2112.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 2042.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2025.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2022.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1980.8
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 1947.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 541.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 541.2
FF:10158-103A5 76 years, female 541.2

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