MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.9 nTPM
HPA Brain:20.4 nTPM
GTEx:1.9 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:4.0 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
2586 Male, age 75, left hemisphere 24.4
1830 Male, age 51, unknown 23.1
1833 Male, age 53, unknown 21.7
2219 Male, age 76, both hemispheres 21.7
2666 Male, age 74, left hemisphere 21.6
2828 Female, age 72, unknown 20.6
1870 Female, age 42, unknown 19.0
1827 Male, age 72, unknown 18.0
2411 Female, age 72, unknown 17.6
2019 Male, age 18, unknown 16.3
Dorsal raphe nucleus
nTPM: 16.3
2750 Male, age 76, both hemispheres 20.6
2047 Male, age 72, unknown 17.1
1828 Male, age 53, unknown 16.0
2016 Female, age 72, unknown 15.1
2298 Female, age 72, unknown 12.7
Inferior colliculus
nTPM: 17.2
2849 Male, age 72, unknown 20.8
1848 Female, age 42, unknown 17.2
1890 Male, age 53, unknown 17.2
2097 Female, age 72, unknown 13.7
Median raphe nucleus
nTPM: 19.0
2220 Male, age 76, midline 19.0
Periaquaductal grey, anterior
nTPM: 17.2
1947 Male, age 18, unknown 17.9
2502 Female, age 75, unknown 17.5
1795 Male, age 51, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 16.3
2850 Male, age 76, both hemispheres 17.4
2464 Female, age 72, unknown 16.8
1831 Male, age 72, unknown 16.6
1840 Male, age 53, unknown 14.5
Periaquaductal grey, lateral
nTPM: 17.3
2140 Male, age 76, both hemispheres 18.3
2053 Male, age 18, unknown 17.8
2272 Male, age 74, both hemispheres 15.8
Pretectal area
nTPM: 16.5
2407 Male, age 75, both hemispheres 22.6
2825 Male, age 18, unknown 19.1
2667 Female, age 75, unknown 19.0
2316 Male, age 76, right hemisphere 18.6
1815 Male, age 53, unknown 15.9
2007 Male, age 72, unknown 15.4
1944 Female, age 72, unknown 14.6
1817 Female, age 42, unknown 14.5
2224 Female, age 72, unknown 14.5
1816 Male, age 51, unknown 13.6
2273 Male, age 74, both hemispheres 13.4
Red nucleus
nTPM: 19.3
2584 Male, age 75, left hemisphere 25.7
2588 Male, age 74, left hemisphere 22.2
2823 Male, age 76, right hemisphere 21.9
1865 Male, age 51, unknown 20.7
2769 Male, age 72, unknown 20.5
2227 Male, age 72, unknown 20.4
1904 Male, age 53, unknown 19.7
2785 Male, age 18, unknown 18.2
1954 Female, age 42, unknown 17.1
2503 Female, age 72, unknown 16.7
1821 Female, age 72, unknown 14.5
2725 Female, age 75, unknown 13.9
Substantia nigra
nTPM: 16.5
2583 Male, age 75, right hemisphere 24.1
2665 Male, age 74, both hemispheres 19.6
2699 Male, age 18, unknown 18.5
2590 Female, age 75, unknown 18.0
1941 Male, age 53, unknown 17.0
1851 Male, age 51, unknown 14.9
1889 Female, age 72, unknown 14.4
1916 Female, age 42, unknown 13.7
2409 Female, age 72, unknown 13.3
2241 Male, age 72, unknown 11.6
Superior colliculus
nTPM: 18.6
1913 Female, age 42, unknown 22.0
2664 Male, age 75, both hemispheres 20.3
1995 Male, age 72, unknown 20.0
1839 Male, age 51, unknown 19.3
2668 Female, age 75, unknown 19.1
1796 Male, age 53, unknown 18.5
1895 Male, age 76, right hemisphere 17.2
2587 Male, age 74, left hemisphere 17.0
2261 Male, age 18, unknown 16.6
2087 Female, age 72, unknown 15.7
Ventral tegmental area
nTPM: 17.4
2223 Female, age 72, unknown 21.4
1942 Male, age 51, unknown 18.3
2218 Male, age 76, both hemispheres 18.2
2021 Male, age 53, unknown 16.9
2410 Female, age 72, unknown 15.9
1915 Female, age 42, unknown 13.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.9
Samples: 139

Max nTPM: 4.8
Min nTPM: 0.6
Std nTPM: 0.6
Median nTPM: 1.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 4.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 4.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 3.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 3.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 3.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 2.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 2.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 2.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 2.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.9
FF:10158-103A5 76 years, female 25.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.6
Samples: 4

Max nTPM: 10.6
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.4
Sample C Male 9.6
Sample D Male 10.6
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.4
Sample C Male 7.3
Sample D Male 9.5
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 7.9
Min nTPM: 6.7
Sample B Female 7.0
Sample C Male 7.9
Sample D Male 6.7
Superior colliculi
nTPM: 6.8
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.0
Sample A Female 6.3
Sample B Female 5.0
Sample C Male 7.2
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.5
Sample A Male 3.5
Sample B Male 3.8
Sample C Female 4.3
Sample D Female 4.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
73712750 Antisense, RP_051206_02_C09, Mouse strain C57BL/6J (56 days, male) 2.9
71574528 Antisense, RP_050915_03_H06, Mouse strain C57BL/6J (56 days, male) 0.2

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