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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:750.5 nTPM
HPA Brain:749.9 nTPM
GTEx:750.5 nTPM
FANTOM5:44.6 Scaled Tags Per Million
Pig:360.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

749.9
Sample id Sample description nTPM
Amygdala
nTPM: 665.4
2695 Female, age 67, right hemisphere 884.4
2517 Female, age 94, left hemisphere 655.7
2814 Male, age 76, right hemisphere 652.0
2514 Male, age 75, right hemisphere 617.7
1987 Female, age 91, left hemisphere 516.9
Basal amygdala
nTPM: 593.1
2827 Female, age 67, right hemisphere 923.3
2685 Female, age 94, left hemisphere 582.5
2110 Male, age 80, left hemisphere 569.6
2609 Male, age 75, right hemisphere 527.3
1955 Male, age 76, both hemispheres 526.2
2243 Female, age 91, right hemisphere 429.7
Central amygdala
nTPM: 716.8
2826 Female, age 94, left hemisphere 1400.8
2239 Male, age 80, left hemisphere 584.1
2515 Male, age 75, right hemisphere 547.0
1905 Male, age 76, both hemispheres 546.1
2701 Female, age 91, right hemisphere 505.8
Corticomedial amygdala
nTPM: 486.5
2535 Female, age 67, right hemisphere 733.4
2240 Male, age 76, both hemispheres 492.0
2428 Male, age 75, right hemisphere 453.1
2829 Male, age 80, left hemisphere 446.0
2429 Female, age 94, left hemisphere 424.1
2242 Female, age 91, right hemisphere 370.6
Lateral amygdala
nTPM: 749.9
2830 Female, age 67, right hemisphere 1108.2
2534 Female, age 94, left hemisphere 963.0
2516 Male, age 75, right hemisphere 723.8
2256 Male, age 80, left hemisphere 669.0
1883 Male, age 76, both hemispheres 529.8
2255 Female, age 91, right hemisphere 505.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

750.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 750.5
Samples: 181

Max nTPM: 1684.4
Min nTPM: 405.6
Std nTPM: 214.6
Median nTPM: 704.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1684.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1620.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1538.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1404.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1305.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1185.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1182.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1145.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1122.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1106.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1086.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1050.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1049.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1046.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1016.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1014.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1013.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1011.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 987.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 986.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 982.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 982.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 977.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 962.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 960.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 957.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 953.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 951.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 942.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 941.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 938.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 937.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 934.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 927.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 924.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 915.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 896.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 896.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 896.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 891.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 888.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 884.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 882.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 881.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 879.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 872.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 861.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 855.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 855.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 852.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 847.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 846.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 843.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 833.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 831.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 828.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 820.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 820.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 819.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 818.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 815.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 808.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 806.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 804.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 802.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 795.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 792.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 786.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 778.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 777.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 767.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 767.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 764.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 747.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 745.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 744.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 743.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 741.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 736.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 732.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 731.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 730.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 728.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 727.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 717.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 712.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 712.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 710.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 707.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 706.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 704.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 703.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 701.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 700.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 700.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 698.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 698.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 697.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 694.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 691.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 688.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 688.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 687.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 682.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 681.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 670.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 665.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 662.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 659.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 657.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 654.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 649.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 648.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 647.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 645.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 644.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 641.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 636.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 635.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 634.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 632.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 631.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 629.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 625.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 624.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 622.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 620.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 619.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 619.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 616.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 613.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 611.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 609.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 607.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 597.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 597.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 596.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 594.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 591.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 588.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 587.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 586.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 581.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 579.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 579.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 575.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 571.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 570.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 565.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 565.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 564.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 560.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 559.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 556.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 546.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 544.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 543.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 541.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 540.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 533.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 533.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 531.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 529.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 528.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 522.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 519.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 514.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 511.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 503.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 496.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 491.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 476.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 474.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 473.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 464.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 460.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 457.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 443.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 422.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 415.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 405.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 44.6
FF:10151-102I7 76 years, female 44.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

360.5
Pig sample Sample description nTPM
Amygdala
nTPM: 360.5
Samples: 4

Max nTPM: 450.7
Min nTPM: 255.3
Sample A Female 405.8
Sample B Female 450.7
Sample C Male 330.2
Sample D Male 255.3

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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