MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.3 nTPM
HPA Brain:44.4 nTPM
GTEx:19.3 nTPM
FANTOM5:60.0 Scaled Tags Per Million
Pig:49.3 nTPM
Mouse:15.6 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.5
2666 Male, age 74, left hemisphere 41.3
2586 Male, age 75, left hemisphere 41.1
1827 Male, age 72, unknown 39.9
2828 Female, age 72, unknown 38.7
2219 Male, age 76, both hemispheres 37.5
1870 Female, age 42, unknown 34.8
1833 Male, age 53, unknown 34.4
1830 Male, age 51, unknown 33.3
2411 Female, age 72, unknown 32.3
2019 Male, age 18, unknown 31.6
Dorsal raphe nucleus
nTPM: 35.2
1828 Male, age 53, unknown 39.9
2016 Female, age 72, unknown 37.6
2047 Male, age 72, unknown 34.9
2298 Female, age 72, unknown 34.8
2750 Male, age 76, both hemispheres 29.0
Inferior colliculus
nTPM: 37.8
2849 Male, age 72, unknown 41.0
2097 Female, age 72, unknown 37.3
1848 Female, age 42, unknown 36.9
1890 Male, age 53, unknown 36.0
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 44.4
1947 Male, age 18, unknown 46.7
2502 Female, age 75, unknown 46.0
1795 Male, age 51, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 37.6
2850 Male, age 76, both hemispheres 41.7
1840 Male, age 53, unknown 37.5
1831 Male, age 72, unknown 36.6
2464 Female, age 72, unknown 34.6
Periaquaductal grey, lateral
nTPM: 36.7
2272 Male, age 74, both hemispheres 38.0
2140 Male, age 76, both hemispheres 36.8
2053 Male, age 18, unknown 35.3
Pretectal area
nTPM: 37.6
1816 Male, age 51, unknown 42.5
1817 Female, age 42, unknown 42.4
1815 Male, age 53, unknown 42.2
2007 Male, age 72, unknown 39.5
1944 Female, age 72, unknown 39.2
2273 Male, age 74, both hemispheres 37.1
2825 Male, age 18, unknown 36.5
2667 Female, age 75, unknown 36.1
2407 Male, age 75, both hemispheres 33.9
2224 Female, age 72, unknown 32.7
2316 Male, age 76, right hemisphere 31.2
Red nucleus
nTPM: 34.5
2725 Female, age 75, unknown 43.4
2588 Male, age 74, left hemisphere 42.5
2503 Female, age 72, unknown 35.6
2584 Male, age 75, left hemisphere 34.2
2785 Male, age 18, unknown 33.9
2227 Male, age 72, unknown 33.5
1821 Female, age 72, unknown 33.2
2769 Male, age 72, unknown 33.1
1954 Female, age 42, unknown 32.2
1865 Male, age 51, unknown 31.6
1904 Male, age 53, unknown 30.9
2823 Male, age 76, right hemisphere 29.6
Substantia nigra
nTPM: 37.2
2699 Male, age 18, unknown 42.8
1916 Female, age 42, unknown 41.8
2665 Male, age 74, both hemispheres 40.5
1851 Male, age 51, unknown 40.0
1889 Female, age 72, unknown 39.1
1941 Male, age 53, unknown 35.5
2241 Male, age 72, unknown 34.8
2583 Male, age 75, right hemisphere 33.6
2409 Female, age 72, unknown 32.6
2590 Female, age 75, unknown 30.8
Superior colliculus
nTPM: 35.9
2664 Male, age 75, both hemispheres 42.7
2587 Male, age 74, left hemisphere 37.6
1839 Male, age 51, unknown 37.5
1796 Male, age 53, unknown 36.9
2261 Male, age 18, unknown 36.3
2087 Female, age 72, unknown 36.1
2668 Female, age 75, unknown 33.7
1895 Male, age 76, right hemisphere 33.5
1995 Male, age 72, unknown 32.8
1913 Female, age 42, unknown 31.7
Ventral tegmental area
nTPM: 34.6
2218 Male, age 76, both hemispheres 37.7
1915 Female, age 42, unknown 36.0
2410 Female, age 72, unknown 35.4
1942 Male, age 51, unknown 34.6
2021 Male, age 53, unknown 33.2
2223 Female, age 72, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.3
Samples: 139

Max nTPM: 38.2
Min nTPM: 11.0
Std nTPM: 4.1
Median nTPM: 19.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 38.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 28.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 28.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 27.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 27.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 26.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 26.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 26.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 25.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.0
FF:10158-103A5 76 years, female 60.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.3
Samples: 4

Max nTPM: 55.7
Min nTPM: 41.9
Sample A Female 55.7
Sample B Female 45.1
Sample C Male 54.4
Sample D Male 41.9
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 48.5
Min nTPM: 38.5
Sample A Female 48.5
Sample B Female 48.5
Sample C Male 38.5
Sample D Male 48.2
Periaqueductal gray
nTPM: 47.9
Samples: 3

Max nTPM: 50.1
Min nTPM: 46.6
Sample B Female 47.0
Sample C Male 50.1
Sample D Male 46.6
Superior colliculi
nTPM: 48.1
Samples: 4

Max nTPM: 57.3
Min nTPM: 40.6
Sample A Female 57.3
Sample B Female 45.4
Sample C Male 40.6
Sample D Male 49.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 14.8
Sample A Male 16.6
Sample B Male 14.8
Sample C Female 15.7
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
71612179 Antisense, RP_050927_02_C04, Mouse strain C57BL/6J (56 days, male) 3.3
74273119 Antisense, RP_050927_02_C04, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org