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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:11.2 nTPM
HPA Brain:57.6 nTPM
GTEx:11.2 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:2.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.6
Sample id Sample description nTPM
Amygdala
nTPM: 49.7
2517 Female, age 94, left hemisphere 56.2
2514 Male, age 75, right hemisphere 54.4
1987 Female, age 91, left hemisphere 48.8
2695 Female, age 67, right hemisphere 45.1
2814 Male, age 76, right hemisphere 44.2
Basal amygdala
nTPM: 55.3
2685 Female, age 94, left hemisphere 58.9
2110 Male, age 80, left hemisphere 57.4
1955 Male, age 76, both hemispheres 56.1
2243 Female, age 91, right hemisphere 54.7
2827 Female, age 67, right hemisphere 53.0
2609 Male, age 75, right hemisphere 51.5
Central amygdala
nTPM: 51.7
2701 Female, age 91, right hemisphere 63.8
2239 Male, age 80, left hemisphere 55.6
1905 Male, age 76, both hemispheres 50.5
2515 Male, age 75, right hemisphere 47.5
2826 Female, age 94, left hemisphere 41.0
Corticomedial amygdala
nTPM: 57.6
2429 Female, age 94, left hemisphere 60.8
2242 Female, age 91, right hemisphere 60.2
2240 Male, age 76, both hemispheres 58.2
2829 Male, age 80, left hemisphere 56.9
2535 Female, age 67, right hemisphere 56.2
2428 Male, age 75, right hemisphere 53.4
Lateral amygdala
nTPM: 53.3
2256 Male, age 80, left hemisphere 60.0
2255 Female, age 91, right hemisphere 56.9
2830 Female, age 67, right hemisphere 55.2
2516 Male, age 75, right hemisphere 52.7
1883 Male, age 76, both hemispheres 50.1
2534 Female, age 94, left hemisphere 44.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 11.2
Samples: 152

Max nTPM: 21.5
Min nTPM: 5.6
Std nTPM: 2.4
Median nTPM: 11.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 21.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 17.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 16.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 16.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 15.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 15.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 14.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 14.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 14.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 14.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 14.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 14.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 14.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 14.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 14.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 14.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 14.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 13.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 13.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 13.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 13.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 13.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 13.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 13.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 13.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 13.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 13.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 13.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 13.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 13.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 13.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 13.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 13.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 13.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 13.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 12.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 12.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 12.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 12.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 12.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 12.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 12.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 12.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 12.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 12.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 12.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 12.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 12.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 12.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 12.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 12.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 12.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 12.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 12.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 11.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 11.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 11.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 11.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 11.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 11.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 11.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 11.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 11.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 11.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 11.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 11.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 11.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 11.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 11.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 11.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 11.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 11.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 11.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 11.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 11.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 11.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 11.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 11.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 11.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 11.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 10.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 10.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 10.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 10.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 10.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 10.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 10.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 10.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 10.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 10.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 10.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 10.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 10.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 10.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 10.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 10.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 10.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 10.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 10.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 10.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 10.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 10.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 10.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 10.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 9.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 9.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 9.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 9.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 9.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 9.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 9.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 9.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 9.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 9.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 9.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 9.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 9.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 9.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 9.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 9.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 9.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 9.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 8.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 8.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 8.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 8.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 8.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 8.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 8.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 8.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 8.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 8.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 8.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 8.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 8.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 7.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 7.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 7.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 7.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 7.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 6.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 6.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 6.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 5.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 13.7
FF:10151-102I7 76 years, female 13.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.1
Pig sample Sample description nTPM
Amygdala
nTPM: 2.1
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.7
Sample A Female 2.7
Sample B Female 2.3
Sample C Male 1.7
Sample D Male 1.7

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