MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:19.5 nTPM
GTEx:7.7 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:6.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2019 Male, age 18, unknown 24.9
2411 Female, age 72, unknown 19.8
1830 Male, age 51, unknown 19.2
1827 Male, age 72, unknown 17.6
2586 Male, age 75, left hemisphere 17.3
1833 Male, age 53, unknown 17.1
2219 Male, age 76, both hemispheres 16.7
2666 Male, age 74, left hemisphere 16.0
1870 Female, age 42, unknown 15.8
2828 Female, age 72, unknown 15.0
Dorsal raphe nucleus
nTPM: 15.9
1828 Male, age 53, unknown 16.8
2298 Female, age 72, unknown 16.6
2016 Female, age 72, unknown 15.7
2750 Male, age 76, both hemispheres 15.7
2047 Male, age 72, unknown 14.6
Inferior colliculus
nTPM: 16.7
2097 Female, age 72, unknown 19.0
1890 Male, age 53, unknown 17.6
1848 Female, age 42, unknown 16.5
2849 Male, age 72, unknown 13.9
Median raphe nucleus
nTPM: 13.8
2220 Male, age 76, midline 13.8
Periaquaductal grey, anterior
nTPM: 16.7
2502 Female, age 75, unknown 19.3
1947 Male, age 18, unknown 15.8
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 16.2
2464 Female, age 72, unknown 17.9
1831 Male, age 72, unknown 16.8
2850 Male, age 76, both hemispheres 15.8
1840 Male, age 53, unknown 14.3
Periaquaductal grey, lateral
nTPM: 15.5
2272 Male, age 74, both hemispheres 18.0
2053 Male, age 18, unknown 15.4
2140 Male, age 76, both hemispheres 13.3
Pretectal area
nTPM: 19.5
2007 Male, age 72, unknown 24.3
1817 Female, age 42, unknown 23.2
1816 Male, age 51, unknown 23.0
1944 Female, age 72, unknown 22.7
1815 Male, age 53, unknown 20.8
2273 Male, age 74, both hemispheres 19.3
2667 Female, age 75, unknown 18.0
2316 Male, age 76, right hemisphere 17.4
2407 Male, age 75, both hemispheres 16.0
2224 Female, age 72, unknown 15.4
2825 Male, age 18, unknown 14.2
Red nucleus
nTPM: 18.5
2785 Male, age 18, unknown 20.8
1821 Female, age 72, unknown 20.4
2823 Male, age 76, right hemisphere 19.2
1904 Male, age 53, unknown 19.0
1865 Male, age 51, unknown 18.9
1954 Female, age 42, unknown 18.9
2503 Female, age 72, unknown 18.8
2588 Male, age 74, left hemisphere 17.6
2725 Female, age 75, unknown 17.3
2227 Male, age 72, unknown 17.1
2584 Male, age 75, left hemisphere 16.8
2769 Male, age 72, unknown 16.8
Substantia nigra
nTPM: 17.9
1889 Female, age 72, unknown 21.7
1941 Male, age 53, unknown 20.0
2241 Male, age 72, unknown 19.6
2665 Male, age 74, both hemispheres 17.7
2409 Female, age 72, unknown 17.5
2583 Male, age 75, right hemisphere 17.1
1851 Male, age 51, unknown 17.0
1916 Female, age 42, unknown 16.5
2590 Female, age 75, unknown 15.8
2699 Male, age 18, unknown 15.6
Superior colliculus
nTPM: 18.9
2087 Female, age 72, unknown 21.1
2668 Female, age 75, unknown 20.7
1995 Male, age 72, unknown 19.9
1913 Female, age 42, unknown 19.3
2261 Male, age 18, unknown 19.2
2587 Male, age 74, left hemisphere 19.0
1895 Male, age 76, right hemisphere 18.4
2664 Male, age 75, both hemispheres 18.2
1839 Male, age 51, unknown 16.9
1796 Male, age 53, unknown 16.2
Ventral tegmental area
nTPM: 16.2
2410 Female, age 72, unknown 18.1
2223 Female, age 72, unknown 17.4
1942 Male, age 51, unknown 15.7
2021 Male, age 53, unknown 15.6
2218 Male, age 76, both hemispheres 15.2
1915 Female, age 42, unknown 15.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 18.9
Min nTPM: 4.2
Std nTPM: 1.6
Median nTPM: 7.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 11.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 11.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 10.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 10.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 10.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 10.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 10.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 9.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 9.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.8
FF:10158-103A5 76 years, female 41.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 23.3
Min nTPM: 17.7
Sample A Female 18.2
Sample B Female 17.7
Sample C Male 22.5
Sample D Male 23.3
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 31.6
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 23.8
Sample C Male 31.6
Sample D Male 29.4
Periaqueductal gray
nTPM: 19.8
Samples: 3

Max nTPM: 20.1
Min nTPM: 19.3
Sample B Female 19.9
Sample C Male 19.3
Sample D Male 20.1
Superior colliculi
nTPM: 25.0
Samples: 4

Max nTPM: 34.0
Min nTPM: 15.6
Sample A Female 21.7
Sample B Female 15.6
Sample C Male 34.0
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 7.3
Min nTPM: 6.0
Sample A Male 6.0
Sample B Male 6.8
Sample C Female 7.3
Sample D Female 6.7

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