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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.4
nTPM
HPA Brain:
21.4
nTPM
GTEx:
12.4
nTPM
FANTOM5:
41.8
Scaled Tags Per Million
Pig:
67.0
nTPM
Mouse:
51.3
nTPM
Allen mouse:
2.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 17.1
1870
Female, age 42, unknown
20.8
2019
Male, age 18, unknown
20.5
2828
Female, age 72, unknown
19.1
2411
Female, age 72, unknown
18.0
1833
Male, age 53, unknown
17.4
1827
Male, age 72, unknown
17.1
1830
Male, age 51, unknown
16.3
2666
Male, age 74, left hemisphere
15.4
2219
Male, age 76, both hemispheres
13.9
2586
Male, age 75, left hemisphere
12.4
Dorsal raphe nucleus nTPM: 21.1
2298
Female, age 72, unknown
29.2
2750
Male, age 76, both hemispheres
20.5
2016
Female, age 72, unknown
19.6
1828
Male, age 53, unknown
18.8
2047
Male, age 72, unknown
17.6
Inferior colliculus nTPM: 20.4
2097
Female, age 72, unknown
26.1
1890
Male, age 53, unknown
19.3
2849
Male, age 72, unknown
18.8
1848
Female, age 42, unknown
17.5
Median raphe nucleus nTPM: 21.3
2220
Male, age 76, midline
21.3
Periaquaductal grey, anterior nTPM: 18.5
1795
Male, age 51, unknown
19.3
2502
Female, age 75, unknown
18.5
1947
Male, age 18, unknown
17.6
Periaquaductal grey, dorsal nTPM: 17.4
2850
Male, age 76, both hemispheres
23.4
1840
Male, age 53, unknown
18.0
1831
Male, age 72, unknown
15.0
2464
Female, age 72, unknown
13.2
Periaquaductal grey, lateral nTPM: 21.4
2272
Male, age 74, both hemispheres
27.6
2140
Male, age 76, both hemispheres
19.2
2053
Male, age 18, unknown
17.3
Pretectal area nTPM: 20.8
2273
Male, age 74, both hemispheres
26.3
2224
Female, age 72, unknown
24.9
1944
Female, age 72, unknown
23.8
1817
Female, age 42, unknown
22.5
2007
Male, age 72, unknown
22.5
1816
Male, age 51, unknown
20.3
1815
Male, age 53, unknown
18.7
2667
Female, age 75, unknown
18.5
2407
Male, age 75, both hemispheres
17.6
2825
Male, age 18, unknown
17.2
2316
Male, age 76, right hemisphere
16.2
Red nucleus nTPM: 20.2
1821
Female, age 72, unknown
23.2
1954
Female, age 42, unknown
21.7
2725
Female, age 75, unknown
21.6
2769
Male, age 72, unknown
21.6
2823
Male, age 76, right hemisphere
21.4
2503
Female, age 72, unknown
21.3
1904
Male, age 53, unknown
20.3
2227
Male, age 72, unknown
20.1
1865
Male, age 51, unknown
19.9
2785
Male, age 18, unknown
19.3
2588
Male, age 74, left hemisphere
17.7
2584
Male, age 75, left hemisphere
13.8
Substantia nigra nTPM: 17.4
1889
Female, age 72, unknown
22.9
1916
Female, age 42, unknown
22.4
1851
Male, age 51, unknown
20.5
2241
Male, age 72, unknown
20.2
1941
Male, age 53, unknown
19.8
2699
Male, age 18, unknown
18.6
2590
Female, age 75, unknown
16.4
2583
Male, age 75, right hemisphere
14.1
2665
Male, age 74, both hemispheres
12.8
2409
Female, age 72, unknown
6.1
Superior colliculus nTPM: 18.2
2261
Male, age 18, unknown
20.7
2587
Male, age 74, left hemisphere
20.5
2087
Female, age 72, unknown
20.2
1913
Female, age 42, unknown
19.6
1895
Male, age 76, right hemisphere
19.5
2668
Female, age 75, unknown
18.6
1796
Male, age 53, unknown
18.1
1995
Male, age 72, unknown
17.5
1839
Male, age 51, unknown
16.1
2664
Male, age 75, both hemispheres
11.1
Ventral tegmental area nTPM: 19.4
2218
Male, age 76, both hemispheres
21.2
1915
Female, age 42, unknown
20.5
2410
Female, age 72, unknown
19.6
2223
Female, age 72, unknown
19.3
2021
Male, age 53, unknown
18.4
1942
Male, age 51, unknown
17.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 12.4
Samples: 139
Max nTPM: 31.2
Min nTPM: 6.1
Std nTPM: 4.0
Median nTPM: 11.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
31.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
26.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
25.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
23.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
22.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
22.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
20.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
19.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
19.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
18.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
18.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
17.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
17.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
17.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
17.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
16.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
16.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
15.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
15.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
15.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
15.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
15.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
15.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
15.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
15.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
14.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
14.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
14.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
14.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
14.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
14.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
14.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
14.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
14.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
13.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
13.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
13.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
13.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
13.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
13.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
13.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
13.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
13.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
13.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
13.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
13.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
13.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
13.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
13.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
13.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
13.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
13.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
13.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
12.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
12.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
12.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
12.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
12.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
12.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
12.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
12.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
11.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
11.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
11.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
11.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
11.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
11.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
11.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
11.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
10.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
10.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
10.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
10.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
10.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
10.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
10.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
10.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
10.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
10.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
10.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
10.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
10.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
10.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
10.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
10.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
10.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
10.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
10.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
10.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
10.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
10.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
9.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
9.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
9.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
9.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
9.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
9.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
9.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
9.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
9.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
9.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
9.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
9.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
9.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
9.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
9.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
8.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
8.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
8.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
8.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
8.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
8.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
8.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
8.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
8.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
8.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
8.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
7.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
7.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
7.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
7.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
6.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
6.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
6.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
6.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 51.3
Samples: 4
Max nTPM: 55.7
Min nTPM: 47.8
Sample A
Male
55.7
Sample B
Male
49.7
Sample C
Female
47.8
Sample D
Female
52.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.