MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:186.1 nTPM
HPA Brain:20.4 nTPM
GTEx:186.1 nTPM
FANTOM5:390.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.4
2828 Female, age 72, unknown 19.3
1870 Female, age 42, unknown 17.1
2666 Male, age 74, left hemisphere 17.0
1830 Male, age 51, unknown 13.9
1833 Male, age 53, unknown 13.1
1827 Male, age 72, unknown 12.6
2411 Female, age 72, unknown 12.2
2019 Male, age 18, unknown 11.2
2586 Male, age 75, left hemisphere 9.3
2219 Male, age 76, both hemispheres 8.6
Dorsal raphe nucleus
nTPM: 17.4
1828 Male, age 53, unknown 19.9
2298 Female, age 72, unknown 18.1
2016 Female, age 72, unknown 17.8
2750 Male, age 76, both hemispheres 16.0
2047 Male, age 72, unknown 15.3
Inferior colliculus
nTPM: 16.5
2097 Female, age 72, unknown 21.6
1890 Male, age 53, unknown 17.6
1848 Female, age 42, unknown 14.1
2849 Male, age 72, unknown 12.5
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 17.2
2502 Female, age 75, unknown 20.8
1795 Male, age 51, unknown 17.7
1947 Male, age 18, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 19.2
2850 Male, age 76, both hemispheres 29.7
1831 Male, age 72, unknown 18.0
2464 Female, age 72, unknown 16.2
1840 Male, age 53, unknown 12.9
Periaquaductal grey, lateral
nTPM: 20.4
2053 Male, age 18, unknown 22.3
2140 Male, age 76, both hemispheres 22.2
2272 Male, age 74, both hemispheres 16.6
Pretectal area
nTPM: 16.3
2224 Female, age 72, unknown 20.0
2273 Male, age 74, both hemispheres 19.6
2316 Male, age 76, right hemisphere 18.6
2825 Male, age 18, unknown 17.9
2667 Female, age 75, unknown 17.3
1817 Female, age 42, unknown 16.1
2007 Male, age 72, unknown 15.7
1944 Female, age 72, unknown 15.6
1815 Male, age 53, unknown 14.4
1816 Male, age 51, unknown 14.3
2407 Male, age 75, both hemispheres 10.2
Red nucleus
nTPM: 19.2
1865 Male, age 51, unknown 23.3
2769 Male, age 72, unknown 22.3
2503 Female, age 72, unknown 22.0
1821 Female, age 72, unknown 21.8
1954 Female, age 42, unknown 21.7
2227 Male, age 72, unknown 20.6
2725 Female, age 75, unknown 20.6
2588 Male, age 74, left hemisphere 18.4
1904 Male, age 53, unknown 17.8
2823 Male, age 76, right hemisphere 17.0
2785 Male, age 18, unknown 15.5
2584 Male, age 75, left hemisphere 9.6
Substantia nigra
nTPM: 17.3
2699 Male, age 18, unknown 29.4
2665 Male, age 74, both hemispheres 26.0
1851 Male, age 51, unknown 18.7
2409 Female, age 72, unknown 17.3
1916 Female, age 42, unknown 16.8
1941 Male, age 53, unknown 15.2
1889 Female, age 72, unknown 14.7
2241 Male, age 72, unknown 14.3
2590 Female, age 75, unknown 12.5
2583 Male, age 75, right hemisphere 8.4
Superior colliculus
nTPM: 16.3
1913 Female, age 42, unknown 25.8
1995 Male, age 72, unknown 21.6
2587 Male, age 74, left hemisphere 19.9
2087 Female, age 72, unknown 17.8
1796 Male, age 53, unknown 17.6
2668 Female, age 75, unknown 14.1
1839 Male, age 51, unknown 12.9
2261 Male, age 18, unknown 12.7
2664 Male, age 75, both hemispheres 11.2
1895 Male, age 76, right hemisphere 9.2
Ventral tegmental area
nTPM: 20.1
2021 Male, age 53, unknown 25.4
1915 Female, age 42, unknown 22.7
2223 Female, age 72, unknown 20.9
2218 Male, age 76, both hemispheres 19.9
1942 Male, age 51, unknown 17.1
2410 Female, age 72, unknown 14.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 186.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 186.1
Samples: 139

Max nTPM: 962.6
Min nTPM: 32.8
Std nTPM: 152.7
Median nTPM: 140.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 962.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 911.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 706.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 606.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 577.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 475.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 467.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 452.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 448.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 419.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 403.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 390.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 390.6
FF:10158-103A5 76 years, female 390.6

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