MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.2 nTPM
HPA Brain:47.7 nTPM
GTEx:27.2 nTPM
FANTOM5:229.1 Scaled Tags Per Million
Pig:98.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.3
1870 Female, age 42, unknown 49.9
1830 Male, age 51, unknown 49.6
1833 Male, age 53, unknown 47.9
2019 Male, age 18, unknown 42.3
2828 Female, age 72, unknown 41.6
2411 Female, age 72, unknown 39.9
2219 Male, age 76, both hemispheres 36.9
1827 Male, age 72, unknown 32.8
2586 Male, age 75, left hemisphere 31.2
2666 Male, age 74, left hemisphere 30.5
Dorsal raphe nucleus
nTPM: 44.3
2016 Female, age 72, unknown 52.8
2298 Female, age 72, unknown 46.0
2750 Male, age 76, both hemispheres 45.6
1828 Male, age 53, unknown 42.1
2047 Male, age 72, unknown 34.8
Inferior colliculus
nTPM: 38.2
2849 Male, age 72, unknown 40.3
1890 Male, age 53, unknown 38.7
2097 Female, age 72, unknown 37.8
1848 Female, age 42, unknown 35.9
Median raphe nucleus
nTPM: 40.2
2220 Male, age 76, midline 40.2
Periaquaductal grey, anterior
nTPM: 35.8
2502 Female, age 75, unknown 45.1
1795 Male, age 51, unknown 32.3
1947 Male, age 18, unknown 29.8
Periaquaductal grey, dorsal
nTPM: 41.8
2850 Male, age 76, both hemispheres 46.6
1831 Male, age 72, unknown 44.4
2464 Female, age 72, unknown 38.9
1840 Male, age 53, unknown 37.4
Periaquaductal grey, lateral
nTPM: 47.7
2272 Male, age 74, both hemispheres 56.6
2140 Male, age 76, both hemispheres 46.6
2053 Male, age 18, unknown 39.9
Pretectal area
nTPM: 38.1
2224 Female, age 72, unknown 49.6
2273 Male, age 74, both hemispheres 48.3
2407 Male, age 75, both hemispheres 47.2
2667 Female, age 75, unknown 43.9
2316 Male, age 76, right hemisphere 42.4
1815 Male, age 53, unknown 38.5
2825 Male, age 18, unknown 37.5
1817 Female, age 42, unknown 34.4
2007 Male, age 72, unknown 27.0
1944 Female, age 72, unknown 26.3
1816 Male, age 51, unknown 24.5
Red nucleus
nTPM: 44.8
1865 Male, age 51, unknown 57.5
1904 Male, age 53, unknown 53.4
2227 Male, age 72, unknown 50.5
2785 Male, age 18, unknown 49.6
2769 Male, age 72, unknown 48.8
1954 Female, age 42, unknown 47.9
2503 Female, age 72, unknown 47.7
1821 Female, age 72, unknown 42.5
2823 Male, age 76, right hemisphere 41.7
2584 Male, age 75, left hemisphere 33.2
2725 Female, age 75, unknown 32.7
2588 Male, age 74, left hemisphere 31.9
Substantia nigra
nTPM: 37.1
2699 Male, age 18, unknown 55.4
1851 Male, age 51, unknown 42.0
1916 Female, age 42, unknown 37.1
2665 Male, age 74, both hemispheres 36.5
2583 Male, age 75, right hemisphere 36.1
2241 Male, age 72, unknown 35.8
2590 Female, age 75, unknown 34.4
1889 Female, age 72, unknown 34.1
2409 Female, age 72, unknown 30.2
1941 Male, age 53, unknown 29.3
Superior colliculus
nTPM: 40.9
1995 Male, age 72, unknown 59.3
1913 Female, age 42, unknown 54.5
2587 Male, age 74, left hemisphere 44.1
1839 Male, age 51, unknown 38.6
1796 Male, age 53, unknown 38.0
2668 Female, age 75, unknown 37.8
2664 Male, age 75, both hemispheres 36.9
1895 Male, age 76, right hemisphere 36.5
2087 Female, age 72, unknown 32.7
2261 Male, age 18, unknown 30.2
Ventral tegmental area
nTPM: 42.2
2223 Female, age 72, unknown 48.0
1915 Female, age 42, unknown 43.7
2410 Female, age 72, unknown 43.3
2021 Male, age 53, unknown 41.4
2218 Male, age 76, both hemispheres 38.7
1942 Male, age 51, unknown 38.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.2
Samples: 139

Max nTPM: 69.7
Min nTPM: 5.2
Std nTPM: 10.8
Median nTPM: 24.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 69.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 59.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 51.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 47.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 45.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 45.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 45.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 45.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 45.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 229.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 229.1
FF:10158-103A5 76 years, female 229.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 98.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.0
Samples: 4

Max nTPM: 109.7
Min nTPM: 65.3
Sample A Female 109.7
Sample B Female 94.1
Sample C Male 75.0
Sample D Male 65.3
Midbrain
nTPM: 88.9
Samples: 4

Max nTPM: 150.5
Min nTPM: 55.6
Sample A Female 150.5
Sample B Female 81.0
Sample C Male 55.6
Sample D Male 68.4
Periaqueductal gray
nTPM: 78.1
Samples: 3

Max nTPM: 87.4
Min nTPM: 65.6
Sample B Female 87.4
Sample C Male 81.4
Sample D Male 65.6
Superior colliculi
nTPM: 98.0
Samples: 4

Max nTPM: 123.3
Min nTPM: 73.4
Sample A Female 121.6
Sample B Female 123.3
Sample C Male 73.4
Sample D Male 73.7

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