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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
83.5
nTPM
HPA Brain:
292.8
nTPM
GTEx:
83.5
nTPM
FANTOM5:
262.7
Scaled Tags Per Million
Pig:
235.5
nTPM
Mouse:
586.3
nTPM
Allen mouse:
23.4
Expression energy
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA035715
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
292.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 222.5
1898
Male, age 80, left hemisphere
289.7
2148
Female, age 91, left hemisphere
255.9
1855
Male, age 76, left hemisphere
252.4
2621
Female, age 67, right hemisphere
239.5
1911
Female, age 85, right hemisphere
196.0
2529
Female, age 94, left hemisphere
101.4
Dentate gyrus nTPM: 261.5
1927
Female, age 91, both hemispheres
493.9
2531
Female, age 67, both hemispheres
316.6
2010
Male, age 76, both hemispheres
259.9
2246
Female, age 85, both hemispheres
211.7
2528
Male, age 74, both hemispheres
146.5
2530
Female, age 94, left hemisphere
140.5
Entorhinal gyrus nTPM: 144.6
1938
Female, age 85, left hemisphere
209.3
2764
Male, age 80, right hemisphere
175.1
2613
Female, age 94, left hemisphere
162.0
1787
Male, age 76, left hemisphere
159.5
2686
Male, age 75, right hemisphere
89.1
2117
Female, age 91, right hemisphere
72.6
Hippocampus, CA1 nTPM: 292.8
2749
Male, age 80, left hemisphere
563.8
2045
Male, age 76, both hemispheres
302.9
1873
Female, age 85, both hemispheres
292.1
2527
Male, age 74, both hemispheres
171.7
2082
Female, age 91, right hemisphere
133.5
Hippocampus, CA2 nTPM: 195.1
1892
Male, age 76, both hemispheres
312.3
1963
Male, age 80, left hemisphere
287.3
2249
Male, age 74, both hemispheres
168.0
1940
Female, age 85, left hemisphere
157.0
2113
Female, age 91, right hemisphere
139.2
2437
Female, age 94, left hemisphere
106.8
Hippocampus, CA3 nTPM: 282.8
2137
Male, age 80, left hemisphere
495.0
2620
Female, age 94, left hemisphere
368.7
1867
Male, age 76, both hemispheres
240.6
2436
Male, age 74, both hemispheres
217.2
2861
Female, age 67, both hemispheres
200.8
1891
Female, age 85, both hemispheres
174.3
Parahippocampal cortex nTPM: 162.1
1850
Male, age 80, both hemispheres
233.4
2245
Female, age 91, both hemispheres
227.7
1990
Female, age 91, right hemisphere
198.7
2693
Female, age 94, both hemispheres
174.9
2018
Male, age 76, both hemispheres
168.6
1933
Female, age 85, both hemispheres
166.0
2250
Female, age 67, right hemisphere
162.1
2532
Female, age 72, left hemisphere
130.0
2622
Female, age 67, right hemisphere
100.9
2692
Male, age 74, both hemispheres
58.5
Perirhinal gyrus nTPM: 243.8
1847
Female, age 91, left hemisphere
344.5
2521
Female, age 94, right hemisphere
241.7
1841
Female, age 85, right hemisphere
230.8
1794
Male, age 80, right hemisphere
219.1
2848
Male, age 76, right hemisphere
182.9
Subiculum nTPM: 149.1
1901
Male, age 80, both hemispheres
227.8
2729
Female, age 91, right hemisphere
159.8
1977
Female, age 85, both hemispheres
159.1
2438
Female, age 94, left hemisphere
155.4
2042
Male, age 76, both hemispheres
133.4
2619
Male, age 74, both hemispheres
59.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
83.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 83.5
Samples: 197
Max nTPM: 299.9
Min nTPM: 1.2
Std nTPM: 65.0
Median nTPM: 66.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
299.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
274.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
263.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
255.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
242.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
239.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
226.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
225.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
222.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
219.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
218.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
207.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
206.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
203.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
194.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
191.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
186.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
185.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
185.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
180.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
178.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
172.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
171.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
169.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
168.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
156.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
156.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
155.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
154.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
153.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
151.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
148.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
146.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
143.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
142.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
142.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
141.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
140.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
138.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
138.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
136.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
136.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
129.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
129.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
128.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
126.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
126.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
125.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
124.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
121.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
121.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
121.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
120.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
119.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
118.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
116.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
113.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
113.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
112.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
111.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
110.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
108.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
107.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
106.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
106.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
105.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
99.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
95.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
95.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
92.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
92.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
91.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
91.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
90.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
90.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
89.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
88.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
87.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
86.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
85.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
84.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
83.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
83.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
83.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
82.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
80.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
80.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
78.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
78.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
76.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
74.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
73.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
72.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
71.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
70.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
70.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
68.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
66.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
66.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
65.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
64.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
64.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
64.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
63.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
61.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
61.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
61.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
61.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
60.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
59.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
58.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
57.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
55.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
55.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
55.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
54.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
54.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
52.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
52.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
48.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
48.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
48.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
46.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
46.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
44.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
44.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
43.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
43.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
43.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
42.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
40.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
39.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
38.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
38.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
38.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
37.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
37.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
36.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
34.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
34.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
33.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
33.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
32.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
31.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
31.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
30.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
30.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
29.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
29.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
28.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
28.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
28.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
27.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
27.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
26.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
25.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
25.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
24.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
24.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
23.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
23.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
20.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
20.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
20.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
19.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
19.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
19.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
18.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
18.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
18.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
17.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
17.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
17.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
17.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
17.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
17.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
17.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
16.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
14.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
14.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
13.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
10.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
10.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
8.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
8.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
7.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
7.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
6.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
6.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
5.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
5.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
5.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
3.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
3.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
586.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 392.0
Samples: 4
Max nTPM: 488.0
Min nTPM: 352.4
Sample A
Male
352.4
Sample B
Male
356.2
Sample C
Female
371.3
Sample D
Female
488.0
Hippocampal formation nTPM: 586.4
Samples: 4
Max nTPM: 748.0
Min nTPM: 498.1
Sample A
Male
498.1
Sample B
Male
599.7
Sample C
Female
748.0
Sample D
Female
499.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.