MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:38.4 nTPM
GTEx:43.8 nTPM
FANTOM5:55.9 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:102.7 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
1827 Male, age 72, unknown 37.4
2411 Female, age 72, unknown 32.9
1870 Female, age 42, unknown 31.3
2828 Female, age 72, unknown 27.6
2666 Male, age 74, left hemisphere 26.6
2586 Male, age 75, left hemisphere 22.7
1833 Male, age 53, unknown 22.0
2219 Male, age 76, both hemispheres 21.9
2019 Male, age 18, unknown 21.1
1830 Male, age 51, unknown 19.6
Dorsal raphe nucleus
nTPM: 28.9
2298 Female, age 72, unknown 37.9
2047 Male, age 72, unknown 29.6
2750 Male, age 76, both hemispheres 29.6
1828 Male, age 53, unknown 24.3
2016 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 26.6
2097 Female, age 72, unknown 38.0
1890 Male, age 53, unknown 23.9
1848 Female, age 42, unknown 23.0
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 34.8
2220 Male, age 76, midline 34.8
Periaquaductal grey, anterior
nTPM: 38.4
1947 Male, age 18, unknown 45.8
1795 Male, age 51, unknown 39.9
2502 Female, age 75, unknown 29.4
Periaquaductal grey, dorsal
nTPM: 26.4
1840 Male, age 53, unknown 28.4
2850 Male, age 76, both hemispheres 26.4
1831 Male, age 72, unknown 25.7
2464 Female, age 72, unknown 25.0
Periaquaductal grey, lateral
nTPM: 27.1
2053 Male, age 18, unknown 30.4
2272 Male, age 74, both hemispheres 26.3
2140 Male, age 76, both hemispheres 24.5
Pretectal area
nTPM: 32.2
2224 Female, age 72, unknown 45.1
1816 Male, age 51, unknown 38.4
2007 Male, age 72, unknown 35.6
1944 Female, age 72, unknown 32.5
2825 Male, age 18, unknown 31.6
2667 Female, age 75, unknown 31.4
1817 Female, age 42, unknown 31.3
1815 Male, age 53, unknown 29.8
2273 Male, age 74, both hemispheres 27.1
2316 Male, age 76, right hemisphere 26.2
2407 Male, age 75, both hemispheres 25.3
Red nucleus
nTPM: 21.2
2725 Female, age 75, unknown 28.3
1821 Female, age 72, unknown 25.9
2588 Male, age 74, left hemisphere 23.8
2785 Male, age 18, unknown 20.8
1865 Male, age 51, unknown 20.7
2503 Female, age 72, unknown 20.3
1954 Female, age 42, unknown 20.1
2823 Male, age 76, right hemisphere 19.8
2584 Male, age 75, left hemisphere 19.5
1904 Male, age 53, unknown 18.9
2769 Male, age 72, unknown 18.4
2227 Male, age 72, unknown 17.7
Substantia nigra
nTPM: 26.1
1889 Female, age 72, unknown 32.0
2241 Male, age 72, unknown 31.5
1851 Male, age 51, unknown 30.1
1916 Female, age 42, unknown 30.0
1941 Male, age 53, unknown 29.4
2583 Male, age 75, right hemisphere 26.4
2590 Female, age 75, unknown 25.4
2665 Male, age 74, both hemispheres 21.6
2409 Female, age 72, unknown 17.8
2699 Male, age 18, unknown 17.4
Superior colliculus
nTPM: 26.1
2261 Male, age 18, unknown 33.9
1796 Male, age 53, unknown 33.6
1895 Male, age 76, right hemisphere 29.6
2087 Female, age 72, unknown 26.3
2587 Male, age 74, left hemisphere 25.8
2668 Female, age 75, unknown 25.1
1839 Male, age 51, unknown 23.9
1913 Female, age 42, unknown 22.3
1995 Male, age 72, unknown 20.6
2664 Male, age 75, both hemispheres 20.2
Ventral tegmental area
nTPM: 28.7
2021 Male, age 53, unknown 31.1
2410 Female, age 72, unknown 30.9
1915 Female, age 42, unknown 30.5
2218 Male, age 76, both hemispheres 27.9
1942 Male, age 51, unknown 27.2
2223 Female, age 72, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 139

Max nTPM: 94.5
Min nTPM: 23.4
Std nTPM: 13.2
Median nTPM: 41.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 94.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 93.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 76.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 73.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 71.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 67.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 66.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 65.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 63.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 61.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.9
FF:10158-103A5 76 years, female 55.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 11.4
Sample A Female 21.7
Sample B Female 14.1
Sample C Male 14.7
Sample D Male 11.4
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 15.0
Sample A Female 17.2
Sample B Female 17.2
Sample C Male 15.0
Sample D Male 20.7
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 16.2
Min nTPM: 14.1
Sample B Female 15.0
Sample C Male 16.2
Sample D Male 14.1
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 23.5
Min nTPM: 15.1
Sample A Female 23.5
Sample B Female 15.6
Sample C Male 15.2
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 102.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.7
Samples: 4

Max nTPM: 116.7
Min nTPM: 94.7
Sample A Male 103.2
Sample B Male 96.0
Sample C Female 94.7
Sample D Female 116.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
72713 Antisense, RP_040407_01_H02, Mouse strain C57BL/6J (56 days, male) 10.7
83167 Antisense, RP_040407_01_H02, Mouse strain C57BL/6J (56 days, male) 10.1
77620389 Antisense, RP_070205_01_E11, Mouse strain C57BL/6J (56 days, male) 3.3
77414123 Antisense, RP_070205_01_E11, Mouse strain C57BL/6J (56 days, male) 1.9

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