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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:228.3 nTPM
HPA Brain:207.2 nTPM
GTEx:228.3 nTPM
FANTOM5:402.3 Scaled Tags Per Million
Pig:112.2 nTPM
Mouse:68.6 nTPM
Allen mouse:4.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.2
Sample id Sample description nTPM
Amygdala
nTPM: 163.2
2514 Male, age 75, right hemisphere 187.3
2814 Male, age 76, right hemisphere 181.2
2517 Female, age 94, left hemisphere 161.1
2695 Female, age 67, right hemisphere 151.5
1987 Female, age 91, left hemisphere 134.9
Basal amygdala
nTPM: 161.9
2827 Female, age 67, right hemisphere 270.9
2609 Male, age 75, right hemisphere 192.1
2110 Male, age 80, left hemisphere 140.6
2685 Female, age 94, left hemisphere 139.9
1955 Male, age 76, both hemispheres 116.7
2243 Female, age 91, right hemisphere 110.9
Central amygdala
nTPM: 162.2
2826 Female, age 94, left hemisphere 200.6
1905 Male, age 76, both hemispheres 163.9
2515 Male, age 75, right hemisphere 159.2
2239 Male, age 80, left hemisphere 148.9
2701 Female, age 91, right hemisphere 138.4
Corticomedial amygdala
nTPM: 135.8
2428 Male, age 75, right hemisphere 202.3
2535 Female, age 67, right hemisphere 190.9
2829 Male, age 80, left hemisphere 129.7
2429 Female, age 94, left hemisphere 124.7
2242 Female, age 91, right hemisphere 92.5
2240 Male, age 76, both hemispheres 74.8
Lateral amygdala
nTPM: 207.2
2830 Female, age 67, right hemisphere 309.5
2516 Male, age 75, right hemisphere 253.5
2256 Male, age 80, left hemisphere 182.5
2534 Female, age 94, left hemisphere 182.2
1883 Male, age 76, both hemispheres 159.1
2255 Female, age 91, right hemisphere 156.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

228.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 228.3
Samples: 181

Max nTPM: 616.5
Min nTPM: 47.9
Std nTPM: 104.2
Median nTPM: 204.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 616.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 555.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 493.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 493.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 454.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 435.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 430.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 426.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 423.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 423.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 421.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 419.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 414.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 412.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 406.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 386.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 384.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 362.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 359.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 359.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 356.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 353.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 353.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 352.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 348.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 346.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 345.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 342.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 340.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 338.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 328.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 328.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 328.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 324.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 323.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 322.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 313.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 313.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 310.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 309.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 308.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 308.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 306.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 302.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 302.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 296.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 293.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 293.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 290.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 289.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 287.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 286.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 283.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 281.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 280.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 274.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 272.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 271.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 266.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 265.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 262.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 261.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 260.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 258.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 255.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 252.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 248.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 246.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 245.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 244.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 240.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 238.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 238.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 235.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 233.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 233.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 230.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 230.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 229.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 223.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 217.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 217.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 216.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 213.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 210.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 209.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 209.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 205.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 205.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 205.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 204.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 202.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 202.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 201.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 197.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 194.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 193.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 189.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 187.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 187.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 186.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 186.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 186.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 185.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 180.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 179.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 179.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 178.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 178.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 176.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 176.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 175.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 170.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 169.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 164.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 163.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 160.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 160.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 156.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 156.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 156.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 155.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 155.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 154.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 154.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 154.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 153.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 152.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 151.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 151.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 150.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 150.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 148.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 146.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 145.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 144.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 144.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 144.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 143.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 142.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 140.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 140.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 139.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 138.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 138.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 138.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 137.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 135.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 133.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 130.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 128.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 128.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 126.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 125.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 125.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 123.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 122.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 118.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 115.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 113.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 113.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 108.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 105.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 101.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 100.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 95.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 94.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 93.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 92.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 91.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 90.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 90.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 89.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 88.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 85.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 47.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

402.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 402.3
FF:10151-102I7 76 years, female 402.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.2
Pig sample Sample description nTPM
Amygdala
nTPM: 112.2
Samples: 4

Max nTPM: 127.4
Min nTPM: 85.3
Sample A Female 117.6
Sample B Female 127.4
Sample C Male 118.4
Sample D Male 85.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 68.7
Samples: 4

Max nTPM: 97.2
Min nTPM: 51.4
Sample A Male 58.4
Sample B Male 51.4
Sample C Female 97.2
Sample D Female 67.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
70437828 Antisense, RP_050614_03_A03, Mouse strain C57BL/6J (56 days, male) 4.3

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