MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.4 nTPM
HPA Brain:213.4 nTPM
GTEx:87.4 nTPM
FANTOM5:1023.4 Scaled Tags Per Million
Pig:66.3 nTPM
Mouse:45.4 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 213.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 174.0
2411 Female, age 72, unknown 244.0
2019 Male, age 18, unknown 213.0
1833 Male, age 53, unknown 200.0
1830 Male, age 51, unknown 194.1
1870 Female, age 42, unknown 193.1
2828 Female, age 72, unknown 163.8
2666 Male, age 74, left hemisphere 146.6
2586 Male, age 75, left hemisphere 134.2
2219 Male, age 76, both hemispheres 129.6
1827 Male, age 72, unknown 121.9
Dorsal raphe nucleus
nTPM: 120.3
2750 Male, age 76, both hemispheres 250.2
1828 Male, age 53, unknown 116.3
2016 Female, age 72, unknown 109.4
2298 Female, age 72, unknown 63.8
2047 Male, age 72, unknown 61.8
Inferior colliculus
nTPM: 103.3
1890 Male, age 53, unknown 118.3
1848 Female, age 42, unknown 102.0
2097 Female, age 72, unknown 101.2
2849 Male, age 72, unknown 91.5
Median raphe nucleus
nTPM: 105.1
2220 Male, age 76, midline 105.1
Periaquaductal grey, anterior
nTPM: 107.4
1947 Male, age 18, unknown 139.2
1795 Male, age 51, unknown 93.5
2502 Female, age 75, unknown 89.6
Periaquaductal grey, dorsal
nTPM: 78.1
2464 Female, age 72, unknown 134.3
1831 Male, age 72, unknown 101.8
1840 Male, age 53, unknown 41.7
2850 Male, age 76, both hemispheres 34.9
Periaquaductal grey, lateral
nTPM: 80.4
2272 Male, age 74, both hemispheres 99.1
2053 Male, age 18, unknown 97.2
2140 Male, age 76, both hemispheres 44.9
Pretectal area
nTPM: 130.3
1815 Male, age 53, unknown 176.6
2407 Male, age 75, both hemispheres 166.7
2007 Male, age 72, unknown 157.0
2316 Male, age 76, right hemisphere 156.0
1817 Female, age 42, unknown 147.0
1944 Female, age 72, unknown 146.5
1816 Male, age 51, unknown 110.7
2667 Female, age 75, unknown 103.1
2825 Male, age 18, unknown 99.5
2273 Male, age 74, both hemispheres 89.9
2224 Female, age 72, unknown 79.9
Red nucleus
nTPM: 213.4
1904 Male, age 53, unknown 254.9
1865 Male, age 51, unknown 252.8
2823 Male, age 76, right hemisphere 229.8
1821 Female, age 72, unknown 223.9
2785 Male, age 18, unknown 216.3
2769 Male, age 72, unknown 213.3
2588 Male, age 74, left hemisphere 212.1
2227 Male, age 72, unknown 208.2
2503 Female, age 72, unknown 202.7
1954 Female, age 42, unknown 183.6
2584 Male, age 75, left hemisphere 181.7
2725 Female, age 75, unknown 181.2
Substantia nigra
nTPM: 132.4
2590 Female, age 75, unknown 198.2
2583 Male, age 75, right hemisphere 175.8
2409 Female, age 72, unknown 164.1
1889 Female, age 72, unknown 152.7
1851 Male, age 51, unknown 152.1
2241 Male, age 72, unknown 119.1
1916 Female, age 42, unknown 100.3
1941 Male, age 53, unknown 99.1
2699 Male, age 18, unknown 82.6
2665 Male, age 74, both hemispheres 80.2
Superior colliculus
nTPM: 158.7
1913 Female, age 42, unknown 234.3
1995 Male, age 72, unknown 230.3
1895 Male, age 76, right hemisphere 177.9
2668 Female, age 75, unknown 164.2
2587 Male, age 74, left hemisphere 155.1
1839 Male, age 51, unknown 138.2
2261 Male, age 18, unknown 136.5
2087 Female, age 72, unknown 130.3
1796 Male, age 53, unknown 126.1
2664 Male, age 75, both hemispheres 93.7
Ventral tegmental area
nTPM: 138.5
2410 Female, age 72, unknown 189.4
2223 Female, age 72, unknown 162.3
2021 Male, age 53, unknown 132.5
2218 Male, age 76, both hemispheres 119.8
1942 Male, age 51, unknown 117.5
1915 Female, age 42, unknown 109.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 87.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.4
Samples: 183

Max nTPM: 353.0
Min nTPM: 11.4
Std nTPM: 57.1
Median nTPM: 70.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 353.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 340.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 290.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 289.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 281.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 236.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 213.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 206.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 205.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 189.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 185.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1023.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1023.4
FF:10158-103A5 76 years, female 1023.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.3
Samples: 4

Max nTPM: 101.9
Min nTPM: 41.3
Sample A Female 59.8
Sample B Female 41.3
Sample C Male 62.1
Sample D Male 101.9
Midbrain
nTPM: 66.0
Samples: 4

Max nTPM: 90.6
Min nTPM: 55.2
Sample A Female 90.6
Sample B Female 59.7
Sample C Male 55.2
Sample D Male 58.5
Periaqueductal gray
nTPM: 43.8
Samples: 3

Max nTPM: 49.2
Min nTPM: 37.2
Sample B Female 49.2
Sample C Male 37.2
Sample D Male 45.0
Superior colliculi
nTPM: 54.9
Samples: 4

Max nTPM: 71.1
Min nTPM: 26.0
Sample A Female 56.1
Sample B Female 26.0
Sample C Male 66.2
Sample D Male 71.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 51.4
Min nTPM: 37.5
Sample A Male 37.5
Sample B Male 42.8
Sample C Female 51.4
Sample D Female 50.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
73497519 Antisense, RP_051121_01_C04, Mouse strain C57BL/6J (56 days, male) 3.8

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