MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:24.4 nTPM
GTEx:10.1 nTPM
FANTOM5:48.1 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:6.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2828 Female, age 72, unknown 21.9
2586 Male, age 75, left hemisphere 21.1
1870 Female, age 42, unknown 19.8
1827 Male, age 72, unknown 19.0
2411 Female, age 72, unknown 16.5
1830 Male, age 51, unknown 15.8
1833 Male, age 53, unknown 15.8
2666 Male, age 74, left hemisphere 13.9
2019 Male, age 18, unknown 13.6
2219 Male, age 76, both hemispheres 11.0
Dorsal raphe nucleus
nTPM: 24.4
2016 Female, age 72, unknown 32.5
1828 Male, age 53, unknown 25.3
2298 Female, age 72, unknown 23.0
2047 Male, age 72, unknown 21.4
2750 Male, age 76, both hemispheres 20.0
Inferior colliculus
nTPM: 18.9
2849 Male, age 72, unknown 20.5
1848 Female, age 42, unknown 20.2
1890 Male, age 53, unknown 18.6
2097 Female, age 72, unknown 16.5
Median raphe nucleus
nTPM: 14.3
2220 Male, age 76, midline 14.3
Periaquaductal grey, anterior
nTPM: 22.7
2502 Female, age 75, unknown 26.5
1795 Male, age 51, unknown 24.4
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 23.4
1840 Male, age 53, unknown 26.6
2850 Male, age 76, both hemispheres 24.1
1831 Male, age 72, unknown 22.0
2464 Female, age 72, unknown 20.7
Periaquaductal grey, lateral
nTPM: 23.9
2053 Male, age 18, unknown 25.8
2140 Male, age 76, both hemispheres 25.7
2272 Male, age 74, both hemispheres 20.1
Pretectal area
nTPM: 19.3
2273 Male, age 74, both hemispheres 24.7
2316 Male, age 76, right hemisphere 23.4
2667 Female, age 75, unknown 23.2
2224 Female, age 72, unknown 22.6
2825 Male, age 18, unknown 21.0
1816 Male, age 51, unknown 20.1
1944 Female, age 72, unknown 19.6
2407 Male, age 75, both hemispheres 19.0
1815 Male, age 53, unknown 14.2
1817 Female, age 42, unknown 12.3
2007 Male, age 72, unknown 11.9
Red nucleus
nTPM: 14.5
2227 Male, age 72, unknown 17.3
2503 Female, age 72, unknown 16.7
2769 Male, age 72, unknown 16.2
2725 Female, age 75, unknown 16.1
1954 Female, age 42, unknown 15.5
2584 Male, age 75, left hemisphere 15.2
2588 Male, age 74, left hemisphere 14.4
1821 Female, age 72, unknown 13.5
2823 Male, age 76, right hemisphere 12.8
1904 Male, age 53, unknown 12.5
2785 Male, age 18, unknown 12.5
1865 Male, age 51, unknown 11.1
Substantia nigra
nTPM: 20.9
2699 Male, age 18, unknown 27.9
2583 Male, age 75, right hemisphere 22.8
1916 Female, age 42, unknown 22.7
2590 Female, age 75, unknown 22.1
2665 Male, age 74, both hemispheres 21.0
2409 Female, age 72, unknown 20.5
2241 Male, age 72, unknown 20.0
1851 Male, age 51, unknown 19.2
1941 Male, age 53, unknown 18.1
1889 Female, age 72, unknown 14.8
Superior colliculus
nTPM: 20.3
2664 Male, age 75, both hemispheres 31.0
1913 Female, age 42, unknown 23.7
1995 Male, age 72, unknown 22.3
1839 Male, age 51, unknown 21.7
1796 Male, age 53, unknown 21.2
2261 Male, age 18, unknown 21.2
2587 Male, age 74, left hemisphere 19.6
2087 Female, age 72, unknown 19.5
1895 Male, age 76, right hemisphere 11.7
2668 Female, age 75, unknown 11.0
Ventral tegmental area
nTPM: 20.7
2021 Male, age 53, unknown 28.4
1942 Male, age 51, unknown 22.6
1915 Female, age 42, unknown 20.3
2410 Female, age 72, unknown 18.3
2218 Male, age 76, both hemispheres 17.7
2223 Female, age 72, unknown 16.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 139

Max nTPM: 29.7
Min nTPM: 1.4
Std nTPM: 4.6
Median nTPM: 9.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 29.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 20.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 18.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 18.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 17.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 17.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.1
FF:10158-103A5 76 years, female 48.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 9.7
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 7.3
Sample C Male 6.8
Sample D Male 9.7
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.7
Sample A Female 7.2
Sample B Female 5.0
Sample C Male 5.4
Sample D Male 4.7
Periaqueductal gray
nTPM: 5.0
Samples: 3

Max nTPM: 5.3
Min nTPM: 4.7
Sample B Female 4.7
Sample C Male 5.1
Sample D Male 5.3
Superior colliculi
nTPM: 5.4
Samples: 4

Max nTPM: 7.4
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 4.9
Sample C Male 5.5
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 6.6
Min nTPM: 6.0
Sample A Male 6.0
Sample B Male 6.6
Sample C Female 6.5
Sample D Female 6.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70946160 Antisense, RP_050317_04_F02, Mouse strain C57BL/6J (56 days, male) 0.5
77792024 Antisense, RP_070208_04_D02, Mouse strain C57BL/6J (56 days, male) 0.3

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