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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
75.7
nTPM
Monaco:
134.3
nTPM
Schmiedel:
187.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.7
HPA sample
nTPM
gdT-cell nTPM: 56.2
Samples: 6
Max nTPM: 82.1
Min nTPM: 32.8
P10809_1007
32.8
P10809_1022
58.5
P10809_1041
82.1
P10809_1060
50.2
P10809_1077
56.7
P10809_1098
57.1
MAIT T-cell nTPM: 55.1
Samples: 6
Max nTPM: 84.2
Min nTPM: 33.6
P10809_1006
33.6
P10809_1024
84.2
P10809_1043
55.1
P10809_1062
55.7
P10809_1083
53.7
P10809_1097
48.4
Memory CD4 T-cell nTPM: 65.4
Samples: 6
Max nTPM: 79.1
Min nTPM: 41.5
P10809_1014
41.5
P10809_1026
78.0
P10809_1045
79.1
P10809_1064
68.2
P10809_1086
64.4
P10809_1113
61.3
Memory CD8 T-cell nTPM: 56.7
Samples: 5
Max nTPM: 65.5
Min nTPM: 39.7
P10809_1012
39.7
P10809_1027
62.6
P10809_1046
59.4
P10809_1065
65.5
P10809_1111
56.4
Naive CD4 T-cell nTPM: 69.6
Samples: 6
Max nTPM: 89.6
Min nTPM: 45.3
P10809_1015
45.3
P10809_1030
75.0
P10809_1049
89.6
P10809_1068
74.0
P10809_1085
64.8
P10809_1112
68.6
Naive CD8 T-cell nTPM: 59.0
Samples: 6
Max nTPM: 79.2
Min nTPM: 36.6
P10809_1016
36.6
P10809_1031
79.2
P10809_1050
58.0
P10809_1069
62.7
P10809_1087
63.3
P10809_1110
54.3
T-reg nTPM: 75.7
Samples: 6
Max nTPM: 101.9
Min nTPM: 41.9
P10809_1018
41.9
P10809_1037
95.2
P10809_1056
101.9
P10809_1075
72.9
P10809_1094
76.2
P10809_1106
65.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
134.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 114.8
Samples: 4
Max nTPM: 123.2
Min nTPM: 111.0
RHH5202_R3573
123.2
RHH5230_R3602
111.5
RHH5259_R3631
111.0
RHH5288_R3660
113.5
Effector memory CD8 T-cell nTPM: 113.8
Samples: 4
Max nTPM: 142.3
Min nTPM: 94.9
RHH5203_R3574
113.3
RHH5231_R3603
104.7
RHH5260_R3632
94.9
RHH5289_R3661
142.3
MAIT T-cell nTPM: 109.0
Samples: 4
Max nTPM: 124.6
Min nTPM: 92.8
RHH5233_R3605
92.8
RHH5205_R3576
124.6
RHH5262_R3634
123.5
RHH5297_R3663
95.2
Memory CD4 T-cell TFH nTPM: 114.9
Samples: 4
Max nTPM: 122.9
Min nTPM: 106.6
RHH5300_R3666
106.6
RHH5236_R3608
122.9
RHH5265_R3637
116.2
RHH5208_R3579
113.7
Memory CD4 T-cell Th1 nTPM: 108.3
Samples: 4
Max nTPM: 116.2
Min nTPM: 101.0
RHH5210_R3581
116.2
RHH5302_R3668
101.0
RHH5238_R3610
110.2
RHH5267_R3639
105.8
Memory CD4 T-cell Th1/Th17 nTPM: 128.6
Samples: 4
Max nTPM: 143.8
Min nTPM: 123.4
RHH5303_R3669
123.6
RHH5211_R3582
143.8
RHH5239_R3611
123.4
RHH5268_R3640
123.7
Memory CD4 T-cell Th17 nTPM: 113.1
Samples: 4
Max nTPM: 130.6
Min nTPM: 88.0
RHH5304_R3670
130.6
RHH5212_R3583
88.0
RHH5240_R3612
116.1
RHH5269_R3641
117.7
Memory CD4 T-cell Th2 nTPM: 134.3
Samples: 4
Max nTPM: 168.6
Min nTPM: 111.7
RHH5305_R3671
111.7
RHH5213_R3584
168.6
RHH5241_R3613
119.2
RHH5270_R3642
137.6
Naive CD4 T-cell nTPM: 129.6
Samples: 4
Max nTPM: 147.3
Min nTPM: 108.6
RHH5306_R3672
108.6
RHH5214_R3585
132.6
RHH5242_R3614
129.8
RHH5271_R3643
147.3
Naive CD8 T-cell nTPM: 119.7
Samples: 4
Max nTPM: 142.5
Min nTPM: 93.9
RHH5201_R3572
142.5
RHH5229_R3601
93.9
RHH5258_R3630
108.1
RHH5287_R3659
134.4
Non-Vd2 gdTCR nTPM: 112.6
Samples: 4
Max nTPM: 130.4
Min nTPM: 88.1
RHH5235_R3607
129.1
RHH5264_R3636
102.9
RHH5207_R3578
130.4
RHH5299_R3665
88.1
T-reg nTPM: 117.7
Samples: 4
Max nTPM: 134.6
Min nTPM: 104.7
RHH5301_R3667
104.7
RHH5237_R3609
107.0
RHH5266_R3638
134.6
RHH5209_R3580
124.4
Terminal effector memory CD4 T-cell nTPM: 98.5
Samples: 2
Max nTPM: 104.0
Min nTPM: 93.0
RHH5243_R3615
93.0
RHH5272_R3644
104.0
Terminal effector memory CD8 T-cell nTPM: 100.6
Samples: 4
Max nTPM: 105.6
Min nTPM: 95.9
RHH5232_R3604
95.9
RHH5204_R3575
96.7
RHH5261_R3633
105.6
RHH5296_R3662
104.0
Vd2 gdTCR nTPM: 100.4
Samples: 4
Max nTPM: 123.7
Min nTPM: 84.6
RHH5234_R3606
123.7
RHH5206_R3577
97.7
RHH5263_R3635
95.5
RHH5298_R3664
84.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
