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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:312.3 nTPM
HPA Brain:115.6 nTPM
GTEx:312.3 nTPM
FANTOM5:226.3 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:22.1 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.6
Sample id Sample description nTPM
Amygdala
nTPM: 115.6
2514 Male, age 75, right hemisphere 136.2
1987 Female, age 91, left hemisphere 118.5
2695 Female, age 67, right hemisphere 117.1
2814 Male, age 76, right hemisphere 106.1
2517 Female, age 94, left hemisphere 100.3
Basal amygdala
nTPM: 106.4
2609 Male, age 75, right hemisphere 176.1
2243 Female, age 91, right hemisphere 99.2
2110 Male, age 80, left hemisphere 95.4
1955 Male, age 76, both hemispheres 94.7
2685 Female, age 94, left hemisphere 93.2
2827 Female, age 67, right hemisphere 80.0
Central amygdala
nTPM: 115.3
2515 Male, age 75, right hemisphere 160.1
2826 Female, age 94, left hemisphere 117.4
1905 Male, age 76, both hemispheres 113.3
2239 Male, age 80, left hemisphere 93.7
2701 Female, age 91, right hemisphere 91.8
Corticomedial amygdala
nTPM: 109.2
2428 Male, age 75, right hemisphere 167.6
2829 Male, age 80, left hemisphere 121.5
2429 Female, age 94, left hemisphere 109.7
2242 Female, age 91, right hemisphere 96.9
2240 Male, age 76, both hemispheres 91.1
2535 Female, age 67, right hemisphere 68.6
Lateral amygdala
nTPM: 103.0
2516 Male, age 75, right hemisphere 163.0
1883 Male, age 76, both hemispheres 115.8
2830 Female, age 67, right hemisphere 95.2
2534 Female, age 94, left hemisphere 85.7
2256 Male, age 80, left hemisphere 81.3
2255 Female, age 91, right hemisphere 77.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

312.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 312.3
Samples: 181

Max nTPM: 777.4
Min nTPM: 156.1
Std nTPM: 95.7
Median nTPM: 295.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 777.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 734.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 660.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 602.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 585.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 563.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 499.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 470.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 463.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 453.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 448.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 445.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 443.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 441.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 440.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 440.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 436.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 420.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 419.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 417.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 414.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 405.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 401.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 397.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 396.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 394.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 393.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 393.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 384.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 382.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 382.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 381.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 380.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 378.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 375.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 374.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 373.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 370.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 366.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 366.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 364.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 362.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 358.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 358.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 355.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 354.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 354.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 353.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 346.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 341.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 341.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 340.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 340.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 340.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 337.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 333.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 333.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 333.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 331.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 330.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 328.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 327.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 327.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 327.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 326.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 324.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 324.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 323.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 322.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 322.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 322.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 318.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 316.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 316.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 315.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 314.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 312.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 311.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 307.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 306.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 306.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 305.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 304.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 302.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 301.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 301.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 300.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 298.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 297.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 297.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 295.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 294.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 293.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 289.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 289.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 288.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 288.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 287.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 287.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 285.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 285.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 285.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 284.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 284.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 283.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 282.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 282.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 281.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 280.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 278.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 278.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 278.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 277.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 274.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 274.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 273.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 273.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 273.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 272.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 271.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 271.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 270.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 270.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 266.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 266.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 266.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 263.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 262.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 261.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 260.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 259.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 259.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 258.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 257.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 255.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 255.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 254.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 252.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 250.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 250.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 247.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 245.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 242.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 237.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 237.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 234.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 233.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 232.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 230.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 229.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 228.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 226.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 225.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 225.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 222.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 222.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 222.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 219.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 218.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 215.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 215.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 215.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 213.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 213.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 207.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 206.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 204.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 200.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 199.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 197.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 196.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 192.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 191.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 191.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 189.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 188.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 180.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 164.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 163.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 159.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 156.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

226.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 226.3
FF:10151-102I7 76 years, female 226.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.5
Pig sample Sample description nTPM
Amygdala
nTPM: 17.5
Samples: 4

Max nTPM: 24.3
Min nTPM: 14.4
Sample A Female 24.3
Sample B Female 14.8
Sample C Male 14.4
Sample D Male 16.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 22.1
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.8
Sample A Male 23.8
Sample B Male 22.1
Sample C Female 18.8
Sample D Female 23.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.4
513242 Antisense, RP_040810_01_D10, Mouse strain C57BL/6J (56 days, male) 2.4

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