MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.1 nTPM
HPA Brain:57.4 nTPM
GTEx:67.1 nTPM
FANTOM5:104.5 Scaled Tags Per Million
Pig:79.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.5
2411 Female, age 72, unknown 54.6
1870 Female, age 42, unknown 52.9
2586 Male, age 75, left hemisphere 49.2
1827 Male, age 72, unknown 46.8
1833 Male, age 53, unknown 43.5
1830 Male, age 51, unknown 41.9
2828 Female, age 72, unknown 39.2
2219 Male, age 76, both hemispheres 37.1
2019 Male, age 18, unknown 36.2
2666 Male, age 74, left hemisphere 33.9
Dorsal raphe nucleus
nTPM: 57.4
2298 Female, age 72, unknown 69.6
2047 Male, age 72, unknown 60.1
2016 Female, age 72, unknown 55.7
2750 Male, age 76, both hemispheres 53.2
1828 Male, age 53, unknown 48.3
Inferior colliculus
nTPM: 44.2
2097 Female, age 72, unknown 51.3
1848 Female, age 42, unknown 42.9
1890 Male, age 53, unknown 42.1
2849 Male, age 72, unknown 40.4
Median raphe nucleus
nTPM: 57.0
2220 Male, age 76, midline 57.0
Periaquaductal grey, anterior
nTPM: 49.0
1947 Male, age 18, unknown 56.3
1795 Male, age 51, unknown 47.1
2502 Female, age 75, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 50.0
2850 Male, age 76, both hemispheres 55.6
1840 Male, age 53, unknown 53.8
2464 Female, age 72, unknown 48.0
1831 Male, age 72, unknown 42.6
Periaquaductal grey, lateral
nTPM: 49.2
2272 Male, age 74, both hemispheres 52.2
2053 Male, age 18, unknown 48.4
2140 Male, age 76, both hemispheres 46.9
Pretectal area
nTPM: 44.8
2224 Female, age 72, unknown 60.9
2273 Male, age 74, both hemispheres 55.7
2825 Male, age 18, unknown 50.1
2667 Female, age 75, unknown 47.6
1815 Male, age 53, unknown 43.4
1816 Male, age 51, unknown 43.2
2007 Male, age 72, unknown 42.7
1817 Female, age 42, unknown 41.2
1944 Female, age 72, unknown 40.2
2316 Male, age 76, right hemisphere 36.7
2407 Male, age 75, both hemispheres 31.5
Red nucleus
nTPM: 40.4
1821 Female, age 72, unknown 56.3
2503 Female, age 72, unknown 44.6
1904 Male, age 53, unknown 44.3
1865 Male, age 51, unknown 42.2
2725 Female, age 75, unknown 40.8
1954 Female, age 42, unknown 40.4
2227 Male, age 72, unknown 39.5
2769 Male, age 72, unknown 38.5
2823 Male, age 76, right hemisphere 37.6
2584 Male, age 75, left hemisphere 37.0
2785 Male, age 18, unknown 35.6
2588 Male, age 74, left hemisphere 27.8
Substantia nigra
nTPM: 45.0
2241 Male, age 72, unknown 53.6
1916 Female, age 42, unknown 51.9
1851 Male, age 51, unknown 51.4
1941 Male, age 53, unknown 44.7
1889 Female, age 72, unknown 44.5
2409 Female, age 72, unknown 42.8
2699 Male, age 18, unknown 42.8
2583 Male, age 75, right hemisphere 40.8
2590 Female, age 75, unknown 39.3
2665 Male, age 74, both hemispheres 37.7
Superior colliculus
nTPM: 43.1
2668 Female, age 75, unknown 49.4
2261 Male, age 18, unknown 46.2
2587 Male, age 74, left hemisphere 45.1
1913 Female, age 42, unknown 44.7
1796 Male, age 53, unknown 44.4
1995 Male, age 72, unknown 42.9
1839 Male, age 51, unknown 41.5
1895 Male, age 76, right hemisphere 40.8
2087 Female, age 72, unknown 38.3
2664 Male, age 75, both hemispheres 37.8
Ventral tegmental area
nTPM: 49.1
2223 Female, age 72, unknown 53.4
2410 Female, age 72, unknown 50.7
1915 Female, age 42, unknown 50.2
2021 Male, age 53, unknown 49.0
2218 Male, age 76, both hemispheres 46.0
1942 Male, age 51, unknown 45.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 67.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.1
Samples: 183

Max nTPM: 100.7
Min nTPM: 24.6
Std nTPM: 12.3
Median nTPM: 66.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 100.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 94.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 92.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 91.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 88.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 88.4
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 87.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 86.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 86.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.5
FF:10158-103A5 76 years, female 104.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.1
Samples: 4

Max nTPM: 99.3
Min nTPM: 64.2
Sample A Female 99.3
Sample B Female 64.2
Sample C Male 71.2
Sample D Male 81.5
Midbrain
nTPM: 74.4
Samples: 4

Max nTPM: 99.1
Min nTPM: 53.6
Sample A Female 77.6
Sample B Female 99.1
Sample C Male 53.6
Sample D Male 67.2
Periaqueductal gray
nTPM: 78.5
Samples: 3

Max nTPM: 88.6
Min nTPM: 72.3
Sample B Female 88.6
Sample C Male 74.5
Sample D Male 72.3
Superior colliculi
nTPM: 64.5
Samples: 4

Max nTPM: 83.7
Min nTPM: 37.9
Sample A Female 83.7
Sample B Female 37.9
Sample C Male 64.0
Sample D Male 72.2

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