MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.6 nTPM
HPA Brain:10.5 nTPM
GTEx:15.6 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:73.3 nTPM
Mouse:20.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.2
2019 Male, age 18, unknown 10.6
2586 Male, age 75, left hemisphere 9.2
2828 Female, age 72, unknown 9.2
2666 Male, age 74, left hemisphere 9.1
2411 Female, age 72, unknown 8.2
1827 Male, age 72, unknown 7.5
1870 Female, age 42, unknown 7.4
1830 Male, age 51, unknown 7.3
2219 Male, age 76, both hemispheres 7.1
1833 Male, age 53, unknown 6.6
Dorsal raphe nucleus
nTPM: 9.2
1828 Male, age 53, unknown 11.2
2047 Male, age 72, unknown 10.5
2750 Male, age 76, both hemispheres 8.5
2298 Female, age 72, unknown 8.3
2016 Female, age 72, unknown 7.3
Inferior colliculus
nTPM: 8.4
1848 Female, age 42, unknown 8.8
1890 Male, age 53, unknown 8.7
2097 Female, age 72, unknown 8.3
2849 Male, age 72, unknown 7.7
Median raphe nucleus
nTPM: 7.9
2220 Male, age 76, midline 7.9
Periaquaductal grey, anterior
nTPM: 10.5
2502 Female, age 75, unknown 11.0
1795 Male, age 51, unknown 10.8
1947 Male, age 18, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 6.5
2464 Female, age 72, unknown 7.7
1840 Male, age 53, unknown 6.2
2850 Male, age 76, both hemispheres 6.1
1831 Male, age 72, unknown 5.8
Periaquaductal grey, lateral
nTPM: 7.2
2272 Male, age 74, both hemispheres 7.7
2140 Male, age 76, both hemispheres 7.0
2053 Male, age 18, unknown 6.9
Pretectal area
nTPM: 8.8
2007 Male, age 72, unknown 12.3
1944 Female, age 72, unknown 10.5
1817 Female, age 42, unknown 10.0
1816 Male, age 51, unknown 9.7
1815 Male, age 53, unknown 9.0
2407 Male, age 75, both hemispheres 8.3
2316 Male, age 76, right hemisphere 7.7
2667 Female, age 75, unknown 7.7
2224 Female, age 72, unknown 7.4
2273 Male, age 74, both hemispheres 7.4
2825 Male, age 18, unknown 6.7
Red nucleus
nTPM: 9.1
2785 Male, age 18, unknown 11.4
2588 Male, age 74, left hemisphere 10.1
2725 Female, age 75, unknown 9.9
1821 Female, age 72, unknown 9.3
1904 Male, age 53, unknown 9.2
2769 Male, age 72, unknown 9.0
2503 Female, age 72, unknown 8.9
2227 Male, age 72, unknown 8.8
1865 Male, age 51, unknown 8.3
2584 Male, age 75, left hemisphere 8.3
1954 Female, age 42, unknown 8.2
2823 Male, age 76, right hemisphere 8.1
Substantia nigra
nTPM: 10.0
1916 Female, age 42, unknown 13.9
1851 Male, age 51, unknown 13.7
2409 Female, age 72, unknown 10.9
1941 Male, age 53, unknown 10.8
2241 Male, age 72, unknown 9.3
2665 Male, age 74, both hemispheres 8.9
1889 Female, age 72, unknown 8.6
2699 Male, age 18, unknown 8.3
2583 Male, age 75, right hemisphere 8.1
2590 Female, age 75, unknown 7.3
Superior colliculus
nTPM: 8.5
2668 Female, age 75, unknown 10.9
2087 Female, age 72, unknown 9.3
1895 Male, age 76, right hemisphere 8.9
2261 Male, age 18, unknown 8.9
2664 Male, age 75, both hemispheres 8.9
2587 Male, age 74, left hemisphere 8.2
1913 Female, age 42, unknown 7.7
1796 Male, age 53, unknown 7.5
1995 Male, age 72, unknown 7.3
1839 Male, age 51, unknown 7.1
Ventral tegmental area
nTPM: 8.9
1915 Female, age 42, unknown 10.9
2410 Female, age 72, unknown 9.9
2218 Male, age 76, both hemispheres 9.0
2021 Male, age 53, unknown 8.5
1942 Male, age 51, unknown 7.7
2223 Female, age 72, unknown 7.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.6
Samples: 139

Max nTPM: 29.8
Min nTPM: 6.9
Std nTPM: 4.3
Median nTPM: 14.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 29.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 27.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 25.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 24.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 24.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 23.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 23.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 23.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 22.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 22.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.2
Samples: 4

Max nTPM: 78.3
Min nTPM: 52.0
Sample A Female 78.3
Sample B Female 52.0
Sample C Male 74.6
Sample D Male 59.7
Midbrain
nTPM: 69.2
Samples: 4

Max nTPM: 85.6
Min nTPM: 57.8
Sample A Female 57.8
Sample B Female 66.2
Sample C Male 85.6
Sample D Male 67.3
Periaqueductal gray
nTPM: 55.9
Samples: 3

Max nTPM: 59.3
Min nTPM: 50.8
Sample B Female 57.7
Sample C Male 59.3
Sample D Male 50.8
Superior colliculi
nTPM: 73.3
Samples: 4

Max nTPM: 86.5
Min nTPM: 57.2
Sample A Female 81.7
Sample B Female 57.2
Sample C Male 86.5
Sample D Male 67.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 22.8
Min nTPM: 15.7
Sample A Male 21.7
Sample B Male 22.8
Sample C Female 15.7
Sample D Female 21.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68162218 Antisense, RP_041122_01_H06, Mouse strain C57BL/6J (56 days, male) 0.0

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