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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
76.6
nTPM
Monaco:
50.6
nTPM
Schmiedel:
226.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.6
HPA sample
nTPM
gdT-cell nTPM: 54.1
Samples: 6
Max nTPM: 66.9
Min nTPM: 36.5
P10809_1007
36.5
P10809_1022
59.1
P10809_1041
62.9
P10809_1060
42.4
P10809_1077
57.0
P10809_1098
66.9
MAIT T-cell nTPM: 75.9
Samples: 6
Max nTPM: 108.1
Min nTPM: 51.3
P10809_1006
51.3
P10809_1024
72.8
P10809_1043
85.6
P10809_1062
79.4
P10809_1083
58.4
P10809_1097
108.1
Memory CD4 T-cell nTPM: 68.6
Samples: 6
Max nTPM: 91.7
Min nTPM: 56.2
P10809_1014
56.2
P10809_1026
56.6
P10809_1045
91.7
P10809_1064
59.3
P10809_1086
70.0
P10809_1113
77.7
Memory CD8 T-cell nTPM: 61.4
Samples: 5
Max nTPM: 82.0
Min nTPM: 40.7
P10809_1012
40.7
P10809_1027
57.6
P10809_1046
76.7
P10809_1065
49.8
P10809_1111
82.0
Naive CD4 T-cell nTPM: 61.1
Samples: 6
Max nTPM: 88.4
Min nTPM: 40.2
P10809_1015
40.2
P10809_1030
59.9
P10809_1049
88.4
P10809_1068
57.9
P10809_1085
61.0
P10809_1112
59.2
Naive CD8 T-cell nTPM: 59.2
Samples: 6
Max nTPM: 70.4
Min nTPM: 47.9
P10809_1016
47.9
P10809_1031
70.4
P10809_1050
62.2
P10809_1069
57.1
P10809_1087
57.2
P10809_1110
60.4
T-reg nTPM: 76.6
Samples: 6
Max nTPM: 92.8
Min nTPM: 59.9
P10809_1018
59.9
P10809_1037
68.9
P10809_1056
84.1
P10809_1075
76.4
P10809_1094
92.8
P10809_1106
77.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 34.9
Samples: 4
Max nTPM: 51.4
Min nTPM: 18.7
RHH5202_R3573
48.1
RHH5230_R3602
18.7
RHH5259_R3631
21.4
RHH5288_R3660
51.4
Effector memory CD8 T-cell nTPM: 30.2
Samples: 4
Max nTPM: 42.2
Min nTPM: 21.8
RHH5203_R3574
42.2
RHH5231_R3603
31.4
RHH5260_R3632
25.2
RHH5289_R3661
21.8
MAIT T-cell nTPM: 41.6
Samples: 4
Max nTPM: 55.4
Min nTPM: 27.6
RHH5233_R3605
41.1
RHH5205_R3576
27.6
RHH5262_R3634
42.2
RHH5297_R3663
55.4
Memory CD4 T-cell TFH nTPM: 50.6
Samples: 4
Max nTPM: 60.1
Min nTPM: 40.8
RHH5300_R3666
51.4
RHH5236_R3608
50.2
RHH5265_R3637
40.8
RHH5208_R3579
60.1
Memory CD4 T-cell Th1 nTPM: 40.4
Samples: 4
Max nTPM: 62.9
Min nTPM: 28.0
RHH5210_R3581
37.9
RHH5302_R3668
62.9
RHH5238_R3610
28.0
RHH5267_R3639
32.7
Memory CD4 T-cell Th1/Th17 nTPM: 39.4
Samples: 4
Max nTPM: 55.6
Min nTPM: 17.2
RHH5303_R3669
55.6
RHH5211_R3582
54.1
RHH5239_R3611
17.2
RHH5268_R3640
30.8
Memory CD4 T-cell Th17 nTPM: 32.6
Samples: 4
Max nTPM: 46.4
Min nTPM: 18.9
RHH5304_R3670
36.4
RHH5212_R3583
46.4
RHH5240_R3612
18.9
RHH5269_R3641
28.5
Memory CD4 T-cell Th2 nTPM: 44.4
Samples: 4
Max nTPM: 66.9
Min nTPM: 33.6
RHH5305_R3671
41.0
RHH5213_R3584
33.6
RHH5241_R3613
66.9
RHH5270_R3642
35.9
Naive CD4 T-cell nTPM: 35.1
Samples: 4
Max nTPM: 45.4
Min nTPM: 27.0
RHH5306_R3672
37.9
RHH5214_R3585
45.4
RHH5242_R3614
27.0
RHH5271_R3643
29.9
Naive CD8 T-cell nTPM: 27.2
Samples: 4
Max nTPM: 34.1
Min nTPM: 9.8
RHH5201_R3572
32.8
RHH5229_R3601
9.8
RHH5258_R3630
32.2
RHH5287_R3659
34.1
Non-Vd2 gdTCR nTPM: 35.6
Samples: 4
Max nTPM: 47.7
Min nTPM: 19.2
RHH5235_R3607
19.2
RHH5264_R3636
47.5
RHH5207_R3578
28.1
RHH5299_R3665
47.7
T-reg nTPM: 44.3
Samples: 4
Max nTPM: 63.3
Min nTPM: 29.4
RHH5301_R3667
63.3
RHH5237_R3609
46.4
RHH5266_R3638
29.4
RHH5209_R3580
38.0
Terminal effector memory CD4 T-cell nTPM: 36.5
Samples: 2
Max nTPM: 51.8
Min nTPM: 21.1
RHH5243_R3615
21.1
RHH5272_R3644
51.8
Terminal effector memory CD8 T-cell nTPM: 38.6
Samples: 4
Max nTPM: 53.3
Min nTPM: 29.2
RHH5232_R3604
30.4
RHH5204_R3575
53.3
RHH5261_R3633
29.2
RHH5296_R3662
41.6
Vd2 gdTCR nTPM: 36.3
Samples: 4
Max nTPM: 51.9
Min nTPM: 20.1
RHH5234_R3606
22.7
RHH5206_R3577
51.9
RHH5263_R3635
20.1
RHH5298_R3664
50.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
