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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
126.5
nTPM
FANTOM5:
113.6
Scaled Tags Per Million
Pig:
51.4
nTPM
Allen mouse:
5.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 53.5
1984
Male, age 76, both hemispheres
70.8
2301
Female, age 85, both hemispheres
60.6
2090
Male, age 80, both hemispheres
41.6
2188
Female, age 91, both hemispheres
40.8
Dorsal cochlear nucleus nTPM: 52.3
2370
Male, age 61, both hemispheres
61.2
2058
Male, age 76, both hemispheres
58.2
2378
Male, age 80, both hemispheres
51.7
2802
Male, age 74, right hemisphere
48.2
2187
Female, age 91, both hemispheres
42.3
Dorsal tegmental nucleus nTPM: 46.7
2083
Male, age 80, both hemispheres
62.5
1936
Male, age 76, left hemisphere
55.3
2326
Male, age 74, both hemispheres
36.5
2358
Male, age 61, both hemispheres
32.5
Dorsolateral tegmental area nTPM: 40.5
2654
Male, age 80, both hemispheres
65.1
2751
Female, age 85, both hemispheres
44.6
2141
Male, age 76, both hemispheres
44.0
2360
Male, age 74, both hemispheres
32.8
2337
Male, age 61, both hemispheres
16.0
Kolliker-Fuse nucleus nTPM: 52.4
2163
Male, age 80, both hemispheres
60.9
2793
Female, age 91, left hemisphere
55.9
2315
Male, age 76, right hemisphere
40.3
Lateral lemniscal nuclei nTPM: 113.5
2169
Male, age 76, both hemispheres
154.5
2453
Male, age 74, right hemisphere
125.0
2036
Male, age 80, both hemispheres
122.0
2746
Female, age 85, left hemisphere
100.2
2320
Female, age 91, left hemisphere
65.9
Lateral parabrachial nucleus nTPM: 66.5
2139
Female, age 85, right hemisphere
129.0
2013
Male, age 80, both hemispheres
67.0
2790
Male, age 61, both hemispheres
41.5
2792
Male, age 76, both hemispheres
28.6
Lateral vestibular nucleus nTPM: 57.8
2184
Male, age 76, both hemispheres
64.2
2311
Male, age 80, both hemispheres
51.4
Locus coeruleus nTPM: 42.0
2123
Female, age 91, both hemispheres
57.5
2162
Male, age 80, both hemispheres
45.1
2788
Male, age 74, unknown
42.6
2720
Male, age 74, both hemispheres
41.4
2317
Female, age 72, unknown
40.5
2014
Male, age 55, unknown
35.4
1980
Male, age 76, both hemispheres
31.6
Medial parabrachial nucleus nTPM: 56.1
2854
Male, age 80, both hemispheres
75.9
2786
Male, age 76, both hemispheres
58.5
2156
Male, age 61, both hemispheres
54.8
2463
Female, age 85, right hemisphere
47.3
2170
Female, age 91, both hemispheres
43.8
Medial periolivary nuclei nTPM: 105.6
2171
Female, age 85, both hemispheres
167.9
2063
Male, age 76, both hemispheres
153.4
2791
Male, age 74, right hemisphere
93.0
2458
Female, age 91, both hemispheres
59.9
2081
Male, age 80, both hemispheres
53.7
Motor facial nucleus nTPM: 103.2
2062
Male, age 76, both hemispheres
165.9
2365
Male, age 74, right hemisphere
109.1
2327
Male, age 80, both hemispheres
103.0
2697
Female, age 85, both hemispheres
94.5
2795
Female, age 91, both hemispheres
91.8
2126
Male, age 61, both hemispheres
55.1
Motor trigeminal nucleus nTPM: 71.7
2560
Male, age 74, both hemispheres
94.4
2079
Male, age 80, both hemispheres
88.0
2309
Male, age 76, both hemispheres
71.9
2335
Male, age 61, both hemispheres
59.9
2321
Female, age 91, both hemispheres
44.5
Nuclei of the trapezoid body nTPM: 126.5
2159
Male, age 61, both hemispheres
171.4
2735
Female, age 85, both hemispheres
161.1
1983
Male, age 76, both hemispheres
129.6
2166
Male, age 80, both hemispheres
85.2
2368
Female, age 91, both hemispheres
85.0
Nucleus raphe magnus nTPM: 118.2
2172
Female, age 85, both hemispheres
162.5
2160
Male, age 61, both hemispheres
144.0
2455
Male, age 74, both hemispheres
128.6
2051
Male, age 76, both hemispheres
104.1
2328
Male, age 80, both hemispheres
96.7
2459
Female, age 91, both hemispheres
73.2
Paramedian reticular nucleus nTPM: 76.7
2050
Female, age 85, both hemispheres
107.6
2057
Male, age 80, both hemispheres
82.0
2313
Male, age 61, both hemispheres
67.8
2052
Male, age 76, both hemispheres
49.5
Pedunculopontine tegmental nucleus nTPM: 48.0
1921
Female, age 85, both hemispheres
61.6
2334
Male, age 80, both hemispheres
43.3
2338
Male, age 61, both hemispheres
39.1
Pontine nuclei nTPM: 100.2
2787
Female, age 85, both hemispheres
163.5
1968
Male, age 76, left hemisphere
126.5
1863
Male, age 55, unknown
119.5
2727
Male, age 61, right hemisphere
116.6
2109
Female, age 72, unknown
91.7
2454
Male, age 74, left hemisphere
70.1
2115
Male, age 80, left hemisphere
67.9
2319
Female, age 91, both hemispheres
46.2
Pontine raphe nucleus nTPM: 73.1
2122
Female, age 85, midline
105.5
2853
Male, age 76, midline
40.7
Posteroventral cochlear nucleus nTPM: 47.7
2752
Female, age 85, both hemispheres
83.3
2070
Male, age 76, both hemispheres
59.0
2371
Male, age 61, both hemispheres
50.3
2341
Male, age 80, both hemispheres
35.4
2135
Female, age 91, both hemispheres
10.4
Principal sensory trigeminal nucleus nTPM: 89.6
2158
Male, age 61, both hemispheres
133.9
2008
Male, age 80, left hemisphere
114.2
2324
Male, age 76, both hemispheres
57.0
2367
Female, age 91, left hemisphere
53.1
Reticular pontine nucleus, caudal nTPM: 77.8
2332
Male, age 80, right hemisphere
110.4
2092
Male, age 76, both hemispheres
104.7
2457
Female, age 91, both hemispheres
58.4
2559
Male, age 74, both hemispheres
37.9
Reticular pontine nucleus, oral nTPM: 67.0
2012
Female, age 85, both hemispheres
94.8
2361
Male, age 74, both hemispheres
90.8
2167
Male, age 76, both hemispheres
51.8
1939
Male, age 80, both hemispheres
49.2
2366
Female, age 91, both hemispheres
48.6
Reticulotegmental nucleus nTPM: 68.9
2325
Male, age 76, both hemispheres
93.9
2452
Male, age 74, both hemispheres
66.0
2333
Male, age 80, both hemispheres
64.3
2322
Female, age 91, both hemispheres
51.4
Spinal trigeminal nucleus, oral nTPM: 61.5
2737
Female, age 85, both hemispheres
70.9
1978
Male, age 76, both hemispheres
59.8
2164
Male, age 80, both hemispheres
53.7
Subcoeruleus area nTPM: 65.3
2089
Male, age 76, left hemisphere
105.6
1958
Male, age 80, both hemispheres
83.0
2323
Female, age 91, left hemisphere
58.8
2451
Male, age 74, both hemispheres
42.9
2369
Female, age 85, left hemisphere
36.2
Superior olive nTPM: 98.1
1875
Female, age 85, both hemispheres
136.0
2020
Male, age 76, both hemispheres
99.7
2364
Male, age 74, right hemisphere
88.2
2329
Male, age 80, right hemisphere
88.1
2561
Female, age 91, both hemispheres
78.4
Ventral periolivary nuclei nTPM: 110.7
2130
Female, age 85, both hemispheres
150.8
2165
Male, age 80, both hemispheres
117.1
2023
Male, age 76, both hemispheres
89.0
2794
Female, age 91, left hemisphere
86.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 80.8
2449
Male, age 74, both hemispheres
121.9
1959
Male, age 76, both hemispheres
104.2
2840
Female, age 85, both hemispheres
83.6
2161
Male, age 80, both hemispheres
81.9
2456
Female, age 91, both hemispheres
58.6
2359
Male, age 61, both hemispheres
34.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.4
Pig sample
Sample description
nTPM
Pons nTPM: 51.5
Samples: 4
Max nTPM: 95.9
Min nTPM: 26.6
Sample A
Female
95.9
Sample B
Female
26.6
Sample C
Male
31.7
Sample D
Male
51.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.