MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.0 nTPM
HPA Brain:42.1 nTPM
GTEx:19.0 nTPM
FANTOM5:77.8 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:44.1 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.0
2586 Male, age 75, left hemisphere 54.3
2019 Male, age 18, unknown 46.9
2666 Male, age 74, left hemisphere 45.2
1827 Male, age 72, unknown 43.0
2828 Female, age 72, unknown 41.8
1833 Male, age 53, unknown 39.6
1830 Male, age 51, unknown 39.2
2219 Male, age 76, both hemispheres 37.4
1870 Female, age 42, unknown 36.6
2411 Female, age 72, unknown 36.2
Dorsal raphe nucleus
nTPM: 35.5
1828 Male, age 53, unknown 38.5
2047 Male, age 72, unknown 38.0
2750 Male, age 76, both hemispheres 36.9
2016 Female, age 72, unknown 32.1
2298 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 38.3
2849 Male, age 72, unknown 44.7
1890 Male, age 53, unknown 37.9
1848 Female, age 42, unknown 35.8
2097 Female, age 72, unknown 34.8
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Periaquaductal grey, anterior
nTPM: 38.8
1947 Male, age 18, unknown 40.8
2502 Female, age 75, unknown 38.9
1795 Male, age 51, unknown 36.5
Periaquaductal grey, dorsal
nTPM: 37.3
2850 Male, age 76, both hemispheres 42.7
1831 Male, age 72, unknown 38.4
1840 Male, age 53, unknown 35.5
2464 Female, age 72, unknown 32.5
Periaquaductal grey, lateral
nTPM: 39.4
2140 Male, age 76, both hemispheres 44.6
2053 Male, age 18, unknown 38.1
2272 Male, age 74, both hemispheres 35.4
Pretectal area
nTPM: 42.1
1817 Female, age 42, unknown 50.3
1816 Male, age 51, unknown 50.1
2007 Male, age 72, unknown 49.4
1944 Female, age 72, unknown 48.4
1815 Male, age 53, unknown 46.1
2407 Male, age 75, both hemispheres 46.0
2667 Female, age 75, unknown 42.0
2825 Male, age 18, unknown 34.9
2316 Male, age 76, right hemisphere 32.8
2273 Male, age 74, both hemispheres 32.2
2224 Female, age 72, unknown 31.5
Red nucleus
nTPM: 40.7
2823 Male, age 76, right hemisphere 46.8
2584 Male, age 75, left hemisphere 46.0
2785 Male, age 18, unknown 43.1
1865 Male, age 51, unknown 41.6
1904 Male, age 53, unknown 41.6
1954 Female, age 42, unknown 40.3
2769 Male, age 72, unknown 40.0
2725 Female, age 75, unknown 39.9
1821 Female, age 72, unknown 39.0
2588 Male, age 74, left hemisphere 38.5
2503 Female, age 72, unknown 35.9
2227 Male, age 72, unknown 35.7
Substantia nigra
nTPM: 40.0
1889 Female, age 72, unknown 47.8
2665 Male, age 74, both hemispheres 47.4
2583 Male, age 75, right hemisphere 46.9
2590 Female, age 75, unknown 41.3
1851 Male, age 51, unknown 40.7
1916 Female, age 42, unknown 39.7
1941 Male, age 53, unknown 38.6
2699 Male, age 18, unknown 37.4
2409 Female, age 72, unknown 34.0
2241 Male, age 72, unknown 26.5
Superior colliculus
nTPM: 40.9
1913 Female, age 42, unknown 45.1
2664 Male, age 75, both hemispheres 44.6
1995 Male, age 72, unknown 43.8
2261 Male, age 18, unknown 41.8
2087 Female, age 72, unknown 41.7
1796 Male, age 53, unknown 41.0
2668 Female, age 75, unknown 39.0
1895 Male, age 76, right hemisphere 38.4
2587 Male, age 74, left hemisphere 38.1
1839 Male, age 51, unknown 35.3
Ventral tegmental area
nTPM: 37.3
2218 Male, age 76, both hemispheres 41.1
1942 Male, age 51, unknown 38.1
2410 Female, age 72, unknown 37.8
1915 Female, age 42, unknown 37.0
2223 Female, age 72, unknown 36.1
2021 Male, age 53, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.0
Samples: 139

Max nTPM: 36.8
Min nTPM: 11.2
Std nTPM: 3.6
Median nTPM: 18.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 32.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 29.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 26.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 26.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 25.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 25.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 24.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 24.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 24.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 24.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.8
FF:10158-103A5 76 years, female 77.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 23.6
Min nTPM: 20.6
Sample A Female 23.2
Sample B Female 20.6
Sample C Male 22.1
Sample D Male 23.6
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 29.9
Min nTPM: 18.4
Sample A Female 26.8
Sample B Female 18.4
Sample C Male 29.9
Sample D Male 21.5
Periaqueductal gray
nTPM: 18.0
Samples: 3

Max nTPM: 18.4
Min nTPM: 17.5
Sample B Female 18.1
Sample C Male 18.4
Sample D Male 17.5
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 24.6
Sample A Female 24.9
Sample B Female 28.0
Sample C Male 30.3
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 44.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 46.2
Min nTPM: 41.0
Sample A Male 41.0
Sample B Male 43.3
Sample C Female 46.2
Sample D Female 46.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69015506 Antisense, RP_050315_01_B04, Mouse strain C57BL/6J (56 days, male) 2.7

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