MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA Brain:8.9 nTPM
GTEx:19.6 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:22.9 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.0
2586 Male, age 75, left hemisphere 9.4
2219 Male, age 76, both hemispheres 9.2
2828 Female, age 72, unknown 8.6
1827 Male, age 72, unknown 8.3
2666 Male, age 74, left hemisphere 8.1
2411 Female, age 72, unknown 7.9
1830 Male, age 51, unknown 7.7
1833 Male, age 53, unknown 7.4
2019 Male, age 18, unknown 7.1
1870 Female, age 42, unknown 6.7
Dorsal raphe nucleus
nTPM: 8.1
2016 Female, age 72, unknown 9.5
2298 Female, age 72, unknown 8.1
2047 Male, age 72, unknown 7.7
2750 Male, age 76, both hemispheres 7.7
1828 Male, age 53, unknown 7.5
Inferior colliculus
nTPM: 8.5
1848 Female, age 42, unknown 9.8
1890 Male, age 53, unknown 8.5
2849 Male, age 72, unknown 8.1
2097 Female, age 72, unknown 7.8
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Periaquaductal grey, anterior
nTPM: 7.5
2502 Female, age 75, unknown 8.2
1795 Male, age 51, unknown 7.8
1947 Male, age 18, unknown 6.6
Periaquaductal grey, dorsal
nTPM: 8.1
2464 Female, age 72, unknown 8.8
2850 Male, age 76, both hemispheres 8.2
1840 Male, age 53, unknown 7.8
1831 Male, age 72, unknown 7.6
Periaquaductal grey, lateral
nTPM: 8.9
2272 Male, age 74, both hemispheres 9.3
2053 Male, age 18, unknown 8.7
2140 Male, age 76, both hemispheres 8.7
Pretectal area
nTPM: 8.0
2316 Male, age 76, right hemisphere 9.5
2273 Male, age 74, both hemispheres 8.9
2825 Male, age 18, unknown 8.9
2007 Male, age 72, unknown 8.8
1944 Female, age 72, unknown 8.3
2407 Male, age 75, both hemispheres 8.1
1815 Male, age 53, unknown 8.0
2224 Female, age 72, unknown 7.4
1816 Male, age 51, unknown 6.6
1817 Female, age 42, unknown 6.6
2667 Female, age 75, unknown 6.6
Red nucleus
nTPM: 8.1
2503 Female, age 72, unknown 10.6
1904 Male, age 53, unknown 9.0
1821 Female, age 72, unknown 8.6
2823 Male, age 76, right hemisphere 8.5
2769 Male, age 72, unknown 8.4
2725 Female, age 75, unknown 8.2
2785 Male, age 18, unknown 7.9
1865 Male, age 51, unknown 7.7
2588 Male, age 74, left hemisphere 7.6
2227 Male, age 72, unknown 7.4
1954 Female, age 42, unknown 7.1
2584 Male, age 75, left hemisphere 6.9
Substantia nigra
nTPM: 8.2
1889 Female, age 72, unknown 9.4
2590 Female, age 75, unknown 9.0
2699 Male, age 18, unknown 9.0
1916 Female, age 42, unknown 8.6
2241 Male, age 72, unknown 8.6
1941 Male, age 53, unknown 8.5
1851 Male, age 51, unknown 8.2
2665 Male, age 74, both hemispheres 8.1
2583 Male, age 75, right hemisphere 6.7
2409 Female, age 72, unknown 5.5
Superior colliculus
nTPM: 7.7
2664 Male, age 75, both hemispheres 9.1
1839 Male, age 51, unknown 8.3
2261 Male, age 18, unknown 8.2
2587 Male, age 74, left hemisphere 7.9
1995 Male, age 72, unknown 7.8
1913 Female, age 42, unknown 7.7
2668 Female, age 75, unknown 7.5
1796 Male, age 53, unknown 7.4
1895 Male, age 76, right hemisphere 7.2
2087 Female, age 72, unknown 5.9
Ventral tegmental area
nTPM: 7.8
1942 Male, age 51, unknown 8.7
2223 Female, age 72, unknown 8.6
2021 Male, age 53, unknown 8.2
1915 Female, age 42, unknown 7.3
2218 Male, age 76, both hemispheres 7.3
2410 Female, age 72, unknown 6.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 139

Max nTPM: 32.0
Min nTPM: 8.8
Std nTPM: 4.0
Median nTPM: 19.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 31.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 28.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 27.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 27.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 26.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 26.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 25.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.1
FF:10158-103A5 76 years, female 36.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 26.7
Min nTPM: 21.3
Sample A Female 22.8
Sample B Female 22.9
Sample C Male 21.3
Sample D Male 26.7
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 17.6
Sample A Female 26.4
Sample B Female 23.4
Sample C Male 17.6
Sample D Male 18.0
Periaqueductal gray
nTPM: 22.9
Samples: 3

Max nTPM: 25.0
Min nTPM: 21.4
Sample B Female 25.0
Sample C Male 22.2
Sample D Male 21.4
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 21.2
Min nTPM: 19.1
Sample A Female 21.2
Sample B Female 20.6
Sample C Male 19.1
Sample D Male 20.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.9
Samples: 4

Max nTPM: 23.8
Min nTPM: 21.4
Sample A Male 23.2
Sample B Male 23.8
Sample C Female 23.0
Sample D Female 21.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69873337 Antisense, RP_050512_01_A09, Mouse strain C57BL/6J (56 days, male) 3.3

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