MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:133.4 nTPM
HPA Brain:64.7 nTPM
GTEx:133.4 nTPM
FANTOM5:180.6 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:10.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 66.2
2828 Female, age 72, unknown 52.0
1870 Female, age 42, unknown 46.1
2666 Male, age 74, left hemisphere 40.8
2411 Female, age 72, unknown 36.1
1833 Male, age 53, unknown 36.0
1827 Male, age 72, unknown 34.8
1830 Male, age 51, unknown 31.7
2219 Male, age 76, both hemispheres 29.7
2019 Male, age 18, unknown 19.4
Dorsal raphe nucleus
nTPM: 50.4
2047 Male, age 72, unknown 59.1
1828 Male, age 53, unknown 55.6
2016 Female, age 72, unknown 50.5
2750 Male, age 76, both hemispheres 44.4
2298 Female, age 72, unknown 42.3
Inferior colliculus
nTPM: 33.8
2849 Male, age 72, unknown 44.7
1890 Male, age 53, unknown 32.9
2097 Female, age 72, unknown 29.0
1848 Female, age 42, unknown 28.4
Median raphe nucleus
nTPM: 64.7
2220 Male, age 76, midline 64.7
Periaquaductal grey, anterior
nTPM: 41.0
1795 Male, age 51, unknown 47.8
2502 Female, age 75, unknown 37.7
1947 Male, age 18, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 54.0
2850 Male, age 76, both hemispheres 76.3
1831 Male, age 72, unknown 52.0
1840 Male, age 53, unknown 50.6
2464 Female, age 72, unknown 37.3
Periaquaductal grey, lateral
nTPM: 56.0
2053 Male, age 18, unknown 67.5
2140 Male, age 76, both hemispheres 67.0
2272 Male, age 74, both hemispheres 33.6
Pretectal area
nTPM: 35.5
2825 Male, age 18, unknown 54.6
2667 Female, age 75, unknown 48.1
2224 Female, age 72, unknown 43.3
2273 Male, age 74, both hemispheres 35.7
1944 Female, age 72, unknown 34.7
2316 Male, age 76, right hemisphere 32.4
1815 Male, age 53, unknown 32.3
1817 Female, age 42, unknown 30.8
2407 Male, age 75, both hemispheres 30.3
1816 Male, age 51, unknown 27.6
2007 Male, age 72, unknown 20.9
Red nucleus
nTPM: 44.7
2725 Female, age 75, unknown 63.1
2227 Male, age 72, unknown 51.4
2584 Male, age 75, left hemisphere 50.8
2769 Male, age 72, unknown 47.9
2503 Female, age 72, unknown 46.8
1821 Female, age 72, unknown 46.2
2823 Male, age 76, right hemisphere 45.7
1865 Male, age 51, unknown 44.6
1954 Female, age 42, unknown 42.8
1904 Male, age 53, unknown 40.9
2588 Male, age 74, left hemisphere 33.7
2785 Male, age 18, unknown 22.2
Substantia nigra
nTPM: 46.6
2699 Male, age 18, unknown 103.9
1916 Female, age 42, unknown 55.5
2409 Female, age 72, unknown 49.4
1851 Male, age 51, unknown 49.3
2583 Male, age 75, right hemisphere 42.7
1941 Male, age 53, unknown 38.6
2665 Male, age 74, both hemispheres 35.5
1889 Female, age 72, unknown 34.0
2241 Male, age 72, unknown 28.5
2590 Female, age 75, unknown 28.2
Superior colliculus
nTPM: 35.6
1913 Female, age 42, unknown 56.2
1995 Male, age 72, unknown 45.0
1796 Male, age 53, unknown 36.6
2664 Male, age 75, both hemispheres 34.7
2587 Male, age 74, left hemisphere 34.1
2087 Female, age 72, unknown 33.0
1839 Male, age 51, unknown 31.6
2261 Male, age 18, unknown 28.8
2668 Female, age 75, unknown 28.2
1895 Male, age 76, right hemisphere 27.2
Ventral tegmental area
nTPM: 47.3
1942 Male, age 51, unknown 54.4
2021 Male, age 53, unknown 54.4
2223 Female, age 72, unknown 52.6
2218 Male, age 76, both hemispheres 49.2
1915 Female, age 42, unknown 42.8
2410 Female, age 72, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 133.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 133.4
Samples: 139

Max nTPM: 416.5
Min nTPM: 23.9
Std nTPM: 83.9
Median nTPM: 111.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 416.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 410.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 401.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 400.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 397.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 376.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 369.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 315.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 309.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 308.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 281.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 180.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.6
FF:10158-103A5 76 years, female 180.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 35.8
Min nTPM: 5.8
Sample A Female 26.9
Sample B Female 26.3
Sample C Male 35.8
Sample D Male 5.8
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 10.9
Min nTPM: 4.0
Sample A Female 8.0
Sample B Female 10.9
Sample C Male 9.6
Sample D Male 4.0
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 11.8
Min nTPM: 4.9
Sample B Female 7.4
Sample C Male 11.8
Sample D Male 4.9
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 4.4
Sample A Female 19.8
Sample B Female 51.4
Sample C Male 15.1
Sample D Male 4.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.9
Sample A Male 12.1
Sample B Male 9.8
Sample C Female 8.9
Sample D Female 9.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
631712 Antisense, RP_040907_01_B01, Mouse strain C57BL/6J (56 days, male) 0.1

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