MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:51.6 nTPM
GTEx:17.3 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:83.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.6
2019 Male, age 18, unknown 64.2
2586 Male, age 75, left hemisphere 53.3
2666 Male, age 74, left hemisphere 46.9
2219 Male, age 76, both hemispheres 41.4
1827 Male, age 72, unknown 40.7
2828 Female, age 72, unknown 36.5
2411 Female, age 72, unknown 34.2
1833 Male, age 53, unknown 25.1
1830 Male, age 51, unknown 22.6
1870 Female, age 42, unknown 21.6
Dorsal raphe nucleus
nTPM: 32.8
1828 Male, age 53, unknown 41.6
2298 Female, age 72, unknown 40.9
2750 Male, age 76, both hemispheres 30.1
2047 Male, age 72, unknown 28.7
2016 Female, age 72, unknown 22.8
Inferior colliculus
nTPM: 29.9
2097 Female, age 72, unknown 37.8
1848 Female, age 42, unknown 30.6
1890 Male, age 53, unknown 30.6
2849 Male, age 72, unknown 20.5
Median raphe nucleus
nTPM: 39.0
2220 Male, age 76, midline 39.0
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 34.4
1795 Male, age 51, unknown 28.6
1947 Male, age 18, unknown 18.4
Periaquaductal grey, dorsal
nTPM: 24.1
1831 Male, age 72, unknown 26.0
2464 Female, age 72, unknown 25.6
1840 Male, age 53, unknown 25.3
2850 Male, age 76, both hemispheres 19.4
Periaquaductal grey, lateral
nTPM: 17.0
2053 Male, age 18, unknown 20.0
2140 Male, age 76, both hemispheres 18.0
2272 Male, age 74, both hemispheres 13.1
Pretectal area
nTPM: 51.6
1816 Male, age 51, unknown 108.7
1944 Female, age 72, unknown 101.6
1817 Female, age 42, unknown 71.7
2007 Male, age 72, unknown 64.5
1815 Male, age 53, unknown 61.6
2667 Female, age 75, unknown 47.2
2224 Female, age 72, unknown 27.0
2316 Male, age 76, right hemisphere 26.4
2407 Male, age 75, both hemispheres 21.9
2825 Male, age 18, unknown 19.8
2273 Male, age 74, both hemispheres 17.6
Red nucleus
nTPM: 25.1
2785 Male, age 18, unknown 50.1
2584 Male, age 75, left hemisphere 40.0
1821 Female, age 72, unknown 31.6
1954 Female, age 42, unknown 24.0
2503 Female, age 72, unknown 21.1
2588 Male, age 74, left hemisphere 21.0
1904 Male, age 53, unknown 20.7
2227 Male, age 72, unknown 20.5
1865 Male, age 51, unknown 19.5
2769 Male, age 72, unknown 19.4
2823 Male, age 76, right hemisphere 18.9
2725 Female, age 75, unknown 13.9
Substantia nigra
nTPM: 48.4
1889 Female, age 72, unknown 71.4
1916 Female, age 42, unknown 64.3
2241 Male, age 72, unknown 60.7
1851 Male, age 51, unknown 55.6
2409 Female, age 72, unknown 50.5
2583 Male, age 75, right hemisphere 48.9
2665 Male, age 74, both hemispheres 44.6
1941 Male, age 53, unknown 37.1
2699 Male, age 18, unknown 28.6
2590 Female, age 75, unknown 22.3
Superior colliculus
nTPM: 44.5
2668 Female, age 75, unknown 93.0
2087 Female, age 72, unknown 86.7
2261 Male, age 18, unknown 43.5
1796 Male, age 53, unknown 41.8
1995 Male, age 72, unknown 35.5
1913 Female, age 42, unknown 35.4
1895 Male, age 76, right hemisphere 34.0
1839 Male, age 51, unknown 29.2
2664 Male, age 75, both hemispheres 26.1
2587 Male, age 74, left hemisphere 19.4
Ventral tegmental area
nTPM: 35.5
2410 Female, age 72, unknown 52.3
1915 Female, age 42, unknown 43.9
2218 Male, age 76, both hemispheres 35.8
2021 Male, age 53, unknown 31.6
1942 Male, age 51, unknown 26.3
2223 Female, age 72, unknown 23.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 139

Max nTPM: 76.5
Min nTPM: 0.6
Std nTPM: 15.3
Median nTPM: 13.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 76.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 71.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 49.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 47.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 46.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 42.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 42.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 40.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 39.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.6
Samples: 4

Max nTPM: 73.4
Min nTPM: 21.0
Sample A Female 73.4
Sample B Female 34.2
Sample C Male 69.9
Sample D Male 21.0
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 33.3
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 33.3
Sample C Male 19.9
Sample D Male 24.3
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 26.6
Min nTPM: 10.6
Sample B Female 26.6
Sample C Male 22.7
Sample D Male 10.6
Superior colliculi
nTPM: 26.4
Samples: 4

Max nTPM: 35.5
Min nTPM: 13.2
Sample A Female 29.6
Sample B Female 13.2
Sample C Male 35.5
Sample D Male 27.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 83.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.8
Samples: 4

Max nTPM: 89.9
Min nTPM: 80.6
Sample A Male 82.3
Sample B Male 82.4
Sample C Female 89.9
Sample D Female 80.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69782385 Antisense, RP_050505_02_H08, Mouse strain C57BL/6J (56 days, male) 1.8
73520999 Antisense, RP_051101_02_H06, Mouse strain C57BL/6J (56 days, male) 0.9

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