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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.9
nTPM
Monaco:
14.6
nTPM
Schmiedel:
15.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.9
HPA sample
nTPM
gdT-cell nTPM: 11.3
Samples: 6
Max nTPM: 16.9
Min nTPM: 8.6
P10809_1007
8.6
P10809_1022
16.9
P10809_1041
14.1
P10809_1060
9.8
P10809_1077
9.1
P10809_1098
9.0
MAIT T-cell nTPM: 10.1
Samples: 6
Max nTPM: 12.4
Min nTPM: 5.3
P10809_1006
5.3
P10809_1024
12.4
P10809_1043
10.9
P10809_1062
12.3
P10809_1083
8.3
P10809_1097
11.4
Memory CD4 T-cell nTPM: 9.9
Samples: 6
Max nTPM: 12.0
Min nTPM: 7.9
P10809_1014
7.9
P10809_1026
12.0
P10809_1045
8.8
P10809_1064
11.1
P10809_1086
11.3
P10809_1113
8.3
Memory CD8 T-cell nTPM: 12.3
Samples: 5
Max nTPM: 15.6
Min nTPM: 10.3
P10809_1012
10.7
P10809_1027
10.8
P10809_1046
14.1
P10809_1065
15.6
P10809_1111
10.3
Naive CD4 T-cell nTPM: 12.8
Samples: 6
Max nTPM: 18.3
Min nTPM: 9.0
P10809_1015
9.0
P10809_1030
12.5
P10809_1049
13.7
P10809_1068
11.7
P10809_1085
18.3
P10809_1112
11.5
Naive CD8 T-cell nTPM: 13.2
Samples: 6
Max nTPM: 17.0
Min nTPM: 9.8
P10809_1016
10.9
P10809_1031
14.4
P10809_1050
9.8
P10809_1069
17.0
P10809_1087
10.6
P10809_1110
16.6
T-reg nTPM: 16.9
Samples: 6
Max nTPM: 30.1
Min nTPM: 7.7
P10809_1018
11.9
P10809_1037
30.1
P10809_1056
27.7
P10809_1075
7.7
P10809_1094
11.7
P10809_1106
12.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 6.9
Samples: 4
Max nTPM: 10.3
Min nTPM: 4.1
RHH5202_R3573
8.5
RHH5230_R3602
10.3
RHH5259_R3631
4.1
RHH5288_R3660
4.5
Effector memory CD8 T-cell nTPM: 6.7
Samples: 4
Max nTPM: 8.5
Min nTPM: 4.2
RHH5203_R3574
7.0
RHH5231_R3603
4.2
RHH5260_R3632
6.9
RHH5289_R3661
8.5
MAIT T-cell nTPM: 9.2
Samples: 4
Max nTPM: 12.4
Min nTPM: 3.5
RHH5233_R3605
3.5
RHH5205_R3576
12.4
RHH5262_R3634
11.2
RHH5297_R3663
9.8
Memory CD4 T-cell TFH nTPM: 10.6
Samples: 4
Max nTPM: 12.7
Min nTPM: 7.3
RHH5300_R3666
12.7
RHH5236_R3608
7.3
RHH5265_R3637
12.2
RHH5208_R3579
10.1
Memory CD4 T-cell Th1 nTPM: 9.7
Samples: 4
Max nTPM: 13.9
Min nTPM: 6.5
RHH5210_R3581
10.7
RHH5302_R3668
7.8
RHH5238_R3610
6.5
RHH5267_R3639
13.9
Memory CD4 T-cell Th1/Th17 nTPM: 9.1
Samples: 4
Max nTPM: 13.9
Min nTPM: 1.5
RHH5303_R3669
13.9
RHH5211_R3582
1.5
RHH5239_R3611
13.2
RHH5268_R3640
7.6
Memory CD4 T-cell Th17 nTPM: 9.1
Samples: 4
Max nTPM: 10.1
Min nTPM: 7.9
RHH5304_R3670
7.9
RHH5212_R3583
9.6
RHH5240_R3612
8.6
RHH5269_R3641
10.1
Memory CD4 T-cell Th2 nTPM: 13.6
Samples: 4
Max nTPM: 19.2
Min nTPM: 7.8
RHH5305_R3671
10.2
RHH5213_R3584
7.8
RHH5241_R3613
19.2
RHH5270_R3642
17.3
Naive CD4 T-cell nTPM: 14.0
Samples: 4
Max nTPM: 17.0
Min nTPM: 11.6
RHH5306_R3672
12.0
RHH5214_R3585
15.5
RHH5242_R3614
11.6
RHH5271_R3643
17.0
Naive CD8 T-cell nTPM: 10.5
Samples: 4
Max nTPM: 15.0
Min nTPM: 7.4
RHH5201_R3572
15.0
RHH5229_R3601
8.0
RHH5258_R3630
7.4
RHH5287_R3659
11.4
Non-Vd2 gdTCR nTPM: 11.1
Samples: 4
Max nTPM: 13.5
Min nTPM: 9.0
RHH5235_R3607
11.5
RHH5264_R3636
10.3
RHH5207_R3578
13.5
RHH5299_R3665
9.0
T-reg nTPM: 11.5
Samples: 4
Max nTPM: 13.4
Min nTPM: 9.9
RHH5301_R3667
10.7
RHH5237_R3609
13.4
RHH5266_R3638
9.9
RHH5209_R3580
12.0
Terminal effector memory CD4 T-cell nTPM: 12.0
Samples: 2
Max nTPM: 13.8
Min nTPM: 10.2
RHH5243_R3615
13.8
RHH5272_R3644
10.2
Terminal effector memory CD8 T-cell nTPM: 10.6
Samples: 4
Max nTPM: 13.0
Min nTPM: 7.6
RHH5232_R3604
13.0
RHH5204_R3575
10.3
RHH5261_R3633
11.4
RHH5296_R3662
7.6
Vd2 gdTCR nTPM: 14.6
Samples: 4
Max nTPM: 16.9
Min nTPM: 11.2
RHH5234_R3606
15.7
RHH5206_R3577
14.6
RHH5263_R3635
16.9
RHH5298_R3664
11.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
