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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:170.0 nTPM
HPA Brain:168.5 nTPM
GTEx:170.0 nTPM
FANTOM5:156.5 Scaled Tags Per Million
Mouse:283.6 nTPM
Allen mouse:6.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.5
Sample id Sample description nTPM
Amygdala
nTPM: 99.2
1987 Female, age 91, left hemisphere 148.9
2517 Female, age 94, left hemisphere 126.3
2514 Male, age 75, right hemisphere 113.9
2814 Male, age 76, right hemisphere 62.2
2695 Female, age 67, right hemisphere 44.6
Basal amygdala
nTPM: 165.5
2243 Female, age 91, right hemisphere 244.7
2609 Male, age 75, right hemisphere 190.2
2685 Female, age 94, left hemisphere 174.3
2827 Female, age 67, right hemisphere 167.5
2110 Male, age 80, left hemisphere 117.5
1955 Male, age 76, both hemispheres 98.6
Central amygdala
nTPM: 124.1
2826 Female, age 94, left hemisphere 155.0
2239 Male, age 80, left hemisphere 147.6
2701 Female, age 91, right hemisphere 145.0
2515 Male, age 75, right hemisphere 107.0
1905 Male, age 76, both hemispheres 66.0
Corticomedial amygdala
nTPM: 168.5
2242 Female, age 91, right hemisphere 292.8
2535 Female, age 67, right hemisphere 208.0
2829 Male, age 80, left hemisphere 172.9
2429 Female, age 94, left hemisphere 134.9
2428 Male, age 75, right hemisphere 120.1
2240 Male, age 76, both hemispheres 82.4
Lateral amygdala
nTPM: 119.7
2534 Female, age 94, left hemisphere 165.7
2255 Female, age 91, right hemisphere 146.8
2830 Female, age 67, right hemisphere 123.4
2256 Male, age 80, left hemisphere 110.0
2516 Male, age 75, right hemisphere 93.0
1883 Male, age 76, both hemispheres 79.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 170.0
Samples: 181

Max nTPM: 482.6
Min nTPM: 38.3
Std nTPM: 67.0
Median nTPM: 165.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 482.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 387.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 342.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 341.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 340.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 334.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 330.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 310.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 294.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 276.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 276.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 263.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 256.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 247.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 245.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 245.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 245.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 244.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 243.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 243.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 242.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 241.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 239.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 239.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 237.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 234.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 234.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 228.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 228.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 227.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 226.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 223.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 221.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 219.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 218.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 217.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 217.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 216.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 215.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 215.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 214.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 214.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 213.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 208.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 207.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 205.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 204.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 204.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 204.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 202.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 202.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 201.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 201.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 201.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 200.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 200.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 196.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 196.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 194.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 194.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 190.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 189.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 189.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 185.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 185.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 184.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 184.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 182.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 182.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 180.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 180.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 180.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 178.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 177.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 177.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 176.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 175.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 172.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 172.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 172.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 172.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 169.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 169.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 169.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 169.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 168.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 168.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 167.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 166.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 166.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 165.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 164.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 163.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 162.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 161.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 160.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 159.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 157.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 157.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 157.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 157.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 156.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 156.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 156.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 156.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 155.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 154.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 152.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 148.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 147.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 146.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 145.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 145.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 144.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 143.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 142.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 140.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 138.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 138.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 138.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 137.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 137.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 136.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 136.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 136.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 136.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 134.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 133.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 133.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 133.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 132.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 130.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 129.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 128.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 127.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 120.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 119.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 118.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 117.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 114.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 112.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 112.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 112.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 110.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 110.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 110.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 109.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 103.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 103.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 102.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 101.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 101.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 101.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 101.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 98.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 95.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 94.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 92.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 92.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 88.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 88.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 88.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 87.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 85.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 81.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 75.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 75.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 72.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 72.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 69.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 62.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 59.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 56.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 49.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 38.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

156.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 156.5
FF:10151-102I7 76 years, female 156.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 283.6
Samples: 4

Max nTPM: 318.7
Min nTPM: 264.7
Sample A Male 264.7
Sample B Male 277.6
Sample C Female 318.7
Sample D Female 273.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.1
2109 Antisense, RP_Baylor_102694, Mouse strain C57BL/6J (56 days, male) 6.1
2110 Antisense, RP_Baylor_102694, Mouse strain C57BL/6J (56 days, male) 0.9

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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