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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.5
nTPM
Monaco:
74.2
nTPM
Schmiedel:
16.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
HPA sample
nTPM
gdT-cell nTPM: 9.1
Samples: 6
Max nTPM: 13.4
Min nTPM: 6.6
P10809_1007
9.0
P10809_1022
9.1
P10809_1041
8.1
P10809_1060
8.5
P10809_1077
13.4
P10809_1098
6.6
MAIT T-cell nTPM: 12.5
Samples: 6
Max nTPM: 23.4
Min nTPM: 6.8
P10809_1006
11.2
P10809_1024
23.4
P10809_1043
11.0
P10809_1062
15.4
P10809_1083
6.8
P10809_1097
7.0
Memory CD4 T-cell nTPM: 11.3
Samples: 6
Max nTPM: 15.5
Min nTPM: 8.4
P10809_1014
11.4
P10809_1026
9.5
P10809_1045
10.4
P10809_1064
15.5
P10809_1086
12.3
P10809_1113
8.4
Memory CD8 T-cell nTPM: 8.9
Samples: 5
Max nTPM: 13.5
Min nTPM: 5.0
P10809_1012
10.8
P10809_1027
13.5
P10809_1046
9.3
P10809_1065
6.1
P10809_1111
5.0
Naive CD4 T-cell nTPM: 12.4
Samples: 6
Max nTPM: 16.4
Min nTPM: 6.9
P10809_1015
11.4
P10809_1030
16.4
P10809_1049
6.9
P10809_1068
14.6
P10809_1085
15.7
P10809_1112
9.4
Naive CD8 T-cell nTPM: 9.8
Samples: 6
Max nTPM: 11.7
Min nTPM: 7.2
P10809_1016
10.8
P10809_1031
8.7
P10809_1050
8.5
P10809_1069
11.7
P10809_1087
11.7
P10809_1110
7.2
T-reg nTPM: 13.5
Samples: 6
Max nTPM: 21.6
Min nTPM: 6.8
P10809_1018
12.0
P10809_1037
17.8
P10809_1056
6.8
P10809_1075
11.1
P10809_1094
21.6
P10809_1106
11.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 57.0
Samples: 4
Max nTPM: 68.9
Min nTPM: 43.1
RHH5202_R3573
68.9
RHH5230_R3602
54.8
RHH5259_R3631
43.1
RHH5288_R3660
61.1
Effector memory CD8 T-cell nTPM: 52.7
Samples: 4
Max nTPM: 77.7
Min nTPM: 43.0
RHH5203_R3574
45.2
RHH5231_R3603
43.0
RHH5260_R3632
44.9
RHH5289_R3661
77.7
MAIT T-cell nTPM: 43.4
Samples: 4
Max nTPM: 54.3
Min nTPM: 34.7
RHH5233_R3605
54.3
RHH5205_R3576
43.6
RHH5262_R3634
34.7
RHH5297_R3663
41.0
Memory CD4 T-cell TFH nTPM: 52.8
Samples: 4
Max nTPM: 64.6
Min nTPM: 43.2
RHH5300_R3666
49.9
RHH5236_R3608
43.2
RHH5265_R3637
53.4
RHH5208_R3579
64.6
Memory CD4 T-cell Th1 nTPM: 53.9
Samples: 4
Max nTPM: 63.9
Min nTPM: 41.4
RHH5210_R3581
63.9
RHH5302_R3668
47.0
RHH5238_R3610
63.4
RHH5267_R3639
41.4
Memory CD4 T-cell Th1/Th17 nTPM: 57.9
Samples: 4
Max nTPM: 67.6
Min nTPM: 50.2
RHH5303_R3669
50.2
RHH5211_R3582
55.0
RHH5239_R3611
67.6
RHH5268_R3640
58.9
Memory CD4 T-cell Th17 nTPM: 65.4
Samples: 4
Max nTPM: 81.4
Min nTPM: 50.6
RHH5304_R3670
78.0
RHH5212_R3583
50.6
RHH5240_R3612
81.4
RHH5269_R3641
51.7
Memory CD4 T-cell Th2 nTPM: 68.7
Samples: 4
Max nTPM: 73.6
Min nTPM: 59.6
RHH5305_R3671
73.6
RHH5213_R3584
70.5
RHH5241_R3613
71.1
RHH5270_R3642
59.6
Naive CD4 T-cell nTPM: 64.9
Samples: 4
Max nTPM: 88.6
Min nTPM: 51.8
RHH5306_R3672
61.3
RHH5214_R3585
57.9
RHH5242_R3614
88.6
RHH5271_R3643
51.8
Naive CD8 T-cell nTPM: 74.3
Samples: 4
Max nTPM: 96.2
Min nTPM: 60.5
RHH5201_R3572
96.2
RHH5229_R3601
76.4
RHH5258_R3630
63.9
RHH5287_R3659
60.5
Non-Vd2 gdTCR nTPM: 41.8
Samples: 4
Max nTPM: 50.7
Min nTPM: 34.7
RHH5235_R3607
38.5
RHH5264_R3636
43.3
RHH5207_R3578
34.7
RHH5299_R3665
50.7
T-reg nTPM: 62.0
Samples: 4
Max nTPM: 71.9
Min nTPM: 57.9
RHH5301_R3667
57.9
RHH5237_R3609
71.9
RHH5266_R3638
60.0
RHH5209_R3580
58.2
Terminal effector memory CD4 T-cell nTPM: 62.7
Samples: 2
Max nTPM: 76.4
Min nTPM: 48.9
RHH5243_R3615
76.4
RHH5272_R3644
48.9
Terminal effector memory CD8 T-cell nTPM: 49.5
Samples: 4
Max nTPM: 66.9
Min nTPM: 32.6
RHH5232_R3604
66.9
RHH5204_R3575
32.6
RHH5261_R3633
45.2
RHH5296_R3662
53.4
Vd2 gdTCR nTPM: 43.1
Samples: 4
Max nTPM: 53.6
Min nTPM: 27.4
RHH5234_R3606
27.4
RHH5206_R3577
48.3
RHH5263_R3635
53.6
RHH5298_R3664
43.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
