MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA Brain:34.7 nTPM
GTEx:27.8 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:54.5 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.0
2586 Male, age 75, left hemisphere 36.0
2828 Female, age 72, unknown 35.5
2411 Female, age 72, unknown 35.4
1870 Female, age 42, unknown 32.6
2666 Male, age 74, left hemisphere 31.6
1833 Male, age 53, unknown 31.4
1827 Male, age 72, unknown 30.6
1830 Male, age 51, unknown 30.2
2019 Male, age 18, unknown 29.2
2219 Male, age 76, both hemispheres 27.6
Dorsal raphe nucleus
nTPM: 34.0
2298 Female, age 72, unknown 37.1
2750 Male, age 76, both hemispheres 35.7
2016 Female, age 72, unknown 33.6
2047 Male, age 72, unknown 33.5
1828 Male, age 53, unknown 30.1
Inferior colliculus
nTPM: 29.0
2097 Female, age 72, unknown 30.3
1848 Female, age 42, unknown 30.0
2849 Male, age 72, unknown 28.5
1890 Male, age 53, unknown 27.2
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Periaquaductal grey, anterior
nTPM: 31.2
1795 Male, age 51, unknown 32.2
1947 Male, age 18, unknown 30.8
2502 Female, age 75, unknown 30.7
Periaquaductal grey, dorsal
nTPM: 28.5
1831 Male, age 72, unknown 29.3
2850 Male, age 76, both hemispheres 29.2
2464 Female, age 72, unknown 28.0
1840 Male, age 53, unknown 27.3
Periaquaductal grey, lateral
nTPM: 30.8
2272 Male, age 74, both hemispheres 33.5
2053 Male, age 18, unknown 30.4
2140 Male, age 76, both hemispheres 28.5
Pretectal area
nTPM: 28.3
2007 Male, age 72, unknown 30.8
1817 Female, age 42, unknown 29.4
1815 Male, age 53, unknown 29.2
2316 Male, age 76, right hemisphere 29.2
2224 Female, age 72, unknown 29.0
2273 Male, age 74, both hemispheres 29.0
2667 Female, age 75, unknown 28.1
2825 Male, age 18, unknown 27.8
1816 Male, age 51, unknown 27.1
1944 Female, age 72, unknown 27.0
2407 Male, age 75, both hemispheres 25.3
Red nucleus
nTPM: 34.7
2769 Male, age 72, unknown 40.0
1904 Male, age 53, unknown 39.4
1821 Female, age 72, unknown 37.7
2227 Male, age 72, unknown 37.3
1954 Female, age 42, unknown 36.3
2823 Male, age 76, right hemisphere 35.6
2503 Female, age 72, unknown 35.0
1865 Male, age 51, unknown 33.7
2725 Female, age 75, unknown 32.1
2785 Male, age 18, unknown 31.5
2588 Male, age 74, left hemisphere 30.2
2584 Male, age 75, left hemisphere 27.9
Substantia nigra
nTPM: 30.5
1916 Female, age 42, unknown 36.4
2699 Male, age 18, unknown 35.9
2590 Female, age 75, unknown 35.1
1851 Male, age 51, unknown 33.6
2665 Male, age 74, both hemispheres 32.5
1941 Male, age 53, unknown 30.9
2583 Male, age 75, right hemisphere 29.4
1889 Female, age 72, unknown 26.9
2409 Female, age 72, unknown 24.1
2241 Male, age 72, unknown 20.3
Superior colliculus
nTPM: 29.2
1995 Male, age 72, unknown 32.9
1913 Female, age 42, unknown 30.8
1796 Male, age 53, unknown 30.7
2261 Male, age 18, unknown 30.6
2587 Male, age 74, left hemisphere 30.5
1839 Male, age 51, unknown 29.4
2087 Female, age 72, unknown 29.1
2668 Female, age 75, unknown 27.6
1895 Male, age 76, right hemisphere 26.1
2664 Male, age 75, both hemispheres 24.8
Ventral tegmental area
nTPM: 31.7
2410 Female, age 72, unknown 35.7
1915 Female, age 42, unknown 34.4
2021 Male, age 53, unknown 31.5
1942 Male, age 51, unknown 30.7
2218 Male, age 76, both hemispheres 30.4
2223 Female, age 72, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.8
Samples: 139

Max nTPM: 40.3
Min nTPM: 14.5
Std nTPM: 4.5
Median nTPM: 27.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 40.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 39.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 38.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 36.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 35.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 35.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 35.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.1
FF:10158-103A5 76 years, female 37.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.5
Samples: 4

Max nTPM: 41.5
Min nTPM: 32.2
Sample A Female 41.5
Sample B Female 32.2
Sample C Male 33.9
Sample D Male 34.4
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 54.5
Min nTPM: 25.3
Sample A Female 54.5
Sample B Female 31.2
Sample C Male 32.2
Sample D Male 25.3
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 29.4
Min nTPM: 24.1
Sample B Female 27.2
Sample C Male 29.4
Sample D Male 24.1
Superior colliculi
nTPM: 38.2
Samples: 4

Max nTPM: 47.8
Min nTPM: 30.9
Sample A Female 47.8
Sample B Female 43.2
Sample C Male 30.9
Sample D Male 30.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 59.6
Min nTPM: 46.2
Sample A Male 58.0
Sample B Male 54.0
Sample C Female 46.2
Sample D Female 59.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69568962 Antisense, RP_050426_03_B09, Mouse strain C57BL/6J (56 days, male) 2.5

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