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  • SUMMARY

  • TISSUE

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  • CELL LINE

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  • REG3A
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:6346.3 nTPM
HPA:6346.3 nTPM
GTEx:2868.7 nTPM
FANTOM5:1066.3 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047894Antibody HPA048334
Endocrine cells -Not detected
Enterocytes -Not detected
Enterocytes - Microvilli -Not detected
Glandular cells Low-
Goblet cells -Not detected
Paneth cells -High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6346.3
overview
Male, age 65
Small intestine sample 232
nTPM: 6027.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 6216
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 6498.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 6642.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2868.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2868.7
Samples: 207

Max nTPM: 15152.7
Min nTPM: 0.0
Std nTPM: 3156.2
Median nTPM: 1697.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 15152.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 14890.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 12663.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 12613.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 12541.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 11239.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 10951.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 10488.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 10413.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 9868.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 9418.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 8924.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 8818.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 8442.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 8376.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 8190.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 8060.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 7507.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 7437.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 7431.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 7290.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 7248.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 6811.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 6688.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 6665.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 6644.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 6419.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 6386.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 6115.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 5923.4
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 5919.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 5889.6
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 5838.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 5677.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5602.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 5579.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 5558.7
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 5476.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 5474.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 5470.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 5382.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 5317.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 5300.9
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 5159.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 5082.5
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 5075.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 4844.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 4791.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 4734.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 4730.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 4644.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 4603.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 4518.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 4515.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 4395.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 4003.8
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 3965.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3922.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 3881.5
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 3876.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3852.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3833.2
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 3772.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 3714.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3647.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3545.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3515.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3350.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 3248.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 3239.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 3206.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3174.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3027.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3004.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2899.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2890.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2853.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2829.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2820.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2685.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2680.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2544.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2508.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2483.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 2442.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2411.6
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 2407.0
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 2354.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2344.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2315.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2290.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2262.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1974.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1942.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1939.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1922.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1901.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1879.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1877.3
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1841.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1824.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1793.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1733.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1697.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1696.0
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1691.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1686.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1664.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1625.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1620.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1580.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1553.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1515.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1514.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1505.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1436.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1434.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1392.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1390.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1381.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1335.8
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 1316.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1290.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1216.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1203.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1189.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1144.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1140.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1113.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1106.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1096.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1091.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1082.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1062.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 986.3
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 909.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 880.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 866.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 856.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 838.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 811.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 772.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 711.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 667.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 625.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 616.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 601.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 555.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 517.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 455.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 441.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 416.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 395.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 391.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 379.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 351.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 315.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 313.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 313.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 300.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 273.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 189.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 167.9
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 120.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 115.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 113.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 106.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 95.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 87.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 87.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 86.3
GTEX-1192X-2526-SM-59868 50-59 years, male 79.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 77.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 65.8
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 51.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 43.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 42.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 41.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 39.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 31.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 29.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 23.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 18.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 15.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 15.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 12.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 10.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 9.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 9.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 7.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 7.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 7.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 7.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 6.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 6.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 4.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 2.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.9
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 0.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.5
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 0.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1066.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1066.3
FF:10024-101D6 15,40,85 years, mixed 1066.3

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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