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  • TISSUE

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  • SCG2
TISSUE PRIMARY DATA HYPOTHALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hypothalamus
Tissue methods
HYPOTHALAMUS - Expression summary
Protein expression
Hypothalamusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Neuronal projections: High
Synapses: Not detected
Mouse brain, Intensity
Hypothalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

156.971
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:391.8 nTPM
HPA Brain:947.9 nTPM
GTEx:391.8 nTPM
Pig:481.9 nTPM
Mouse:936.2 nTPM
Allen mouse:11.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA011893
Glial cells Not detected
Neuronal cells Medium
Neuronal projections High
Synapses Not detected

HYPOTHALAMUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA075062
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

HYPOTHALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA075062
Hypothalamus mean intensity 156.971
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Dorsal tuberomammillary nucleus -
Mammillary nucleus -
Periventricular hypothalamic nucleus 156.971
Supraoptic nucleus 62.238
Tuberal nucleus 25.960
Ventral tuberomammillary nucleus -
Lateral preoptic area 8.124
Medial preoptic area 99.709
Suprachiasmatic nucleus 117.473
Paraventricular hypothalamic nucleus 116.123
Anterior hypothalamic area, central 28.918
Ventral medial hypothalamic nucleus 16.291
Ventral medial hypothalamic nucleus* -
Arcuate nucleus 154.102
Arcuate nucleus* -
Peduncular part of lateral hypothalmus 16.571
Dorsal medial hypothalamic nucleus 33.815
Stria terminalis* -

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

947.9
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 947.9
2226 Male, age 75, left hemisphere 1738.1
1961 Female, age 42, unknown 157.7
Dorsomedial nucleus
nTPM: 194.0
2041 Female, age 72, unknown 268.2
1989 Male, age 62, unknown 180.2
2017 Female, age 42, unknown 133.8
Lateral hypothalamic area
nTPM: 373.1
2228 Male, age 66, unknown 871.5
1791 Male, age 80, right hemisphere 278.2
2271 Male, age 75, both hemispheres 220.8
2412 Male, age 62, unknown 121.9
Mammillary body
nTPM: 152.6
1923 Female, age 72, unknown 305.1
1948 Female, age 72, unknown 168.0
2413 Male, age 66, unknown 138.3
1834 Female, age 42, unknown 108.7
1945 Male, age 80, right hemisphere 42.7
Paraventricular nucleus
nTPM: 202.3
2700 Male, age 62, unknown 202.3
Preoptic area
nTPM: 218.6
1907 Male, age 80, right hemisphere 353.6
2414 Female, age 72, unknown 206.6
1861 Female, age 42, unknown 95.6
Supraoptic nucleus
nTPM: 119.3
1894 Female, age 72, unknown 179.2
2835 Female, age 72, unknown 96.1
2043 Male, age 62, unknown 82.7
Ventromedial nucleus
nTPM: 152.7
1982 Female, age 72, unknown 158.7
1822 Female, age 42, unknown 146.7

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

391.8
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 391.8
Samples: 257

Max nTPM: 1756.9
Min nTPM: 10.3
Std nTPM: 253.5
Median nTPM: 357.7
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 1756.9
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 1316.3
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 1233.4
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 1219.0
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 1050.6
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 996.5
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 963.8
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 941.6
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 933.6
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 898.8
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 841.4
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 816.8
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 805.8
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 799.1
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 785.5
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 783.1
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 776.2
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 775.2
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 759.7
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 752.1
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 746.0
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 729.7
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 727.7
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 726.2
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 723.4
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 719.3
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 703.1
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 699.4
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 679.4
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 676.1
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 675.3
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 673.6
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 672.9
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 659.8
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 658.9
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 650.9
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 648.2
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 647.9
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 647.4
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 642.0
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 627.8
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 622.1
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 621.8
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 615.9
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 615.4
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 614.1
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 585.0
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 584.4
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 582.3
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 578.8
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 566.9
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 563.1
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 562.6
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 560.6
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 555.8
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 554.1
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 553.5
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 546.7
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 541.0
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 540.9
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 540.1
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 537.0
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 533.5
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 527.1
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 526.9
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 525.8
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 519.0
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 517.4
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 516.2
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 514.6
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 510.6
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 508.9
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 499.6
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 494.9
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 493.8
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 491.9
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 489.8
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 487.4
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 487.2
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 481.1
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 477.0
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 475.0
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 474.7
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 472.5
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 466.7
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 457.3
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 454.1
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 454.0
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 452.0
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 450.6
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 449.7
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 449.2
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 448.9
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 445.9
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 444.8
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 443.1
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 440.1
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 439.8
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 437.8
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 429.5
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 429.3
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 427.6
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 424.5
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 421.3
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 418.9
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 418.7
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 417.3
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 416.9
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 414.1
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 414.0
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 411.3
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 407.4
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 405.6
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 404.6
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 404.0
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 403.8
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 399.4
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 399.0
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 394.0
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 391.7
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 391.5
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 391.0
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 387.1
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 382.2
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 372.1
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 369.7
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 367.4
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 359.9
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 357.7
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 356.7
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 356.5
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 355.5
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 353.8
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 353.3
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 352.8
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 351.8
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 351.7
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 349.1
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 344.8
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 338.8
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 336.8
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 335.8
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 321.4
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 321.1
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 319.6
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 316.9
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 315.2
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 306.3
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 305.7
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 305.0
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 301.1
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 300.1
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 300.0
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 298.5
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 298.1
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 294.0
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 287.6
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 280.8
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 280.7
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 280.4
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 271.2
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 270.7
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 267.5
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 265.6
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 264.6
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 261.1
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 260.1
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 252.2
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 249.9
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 249.4
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 249.4
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 249.2
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 249.1
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 247.8
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 247.6
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 246.3
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 244.3
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 244.2
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 238.9
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 230.6
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 230.0
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 229.8
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 223.1
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 220.0
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 218.3
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 215.8
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 215.2
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 214.3
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 212.2
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 201.1
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 198.1
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 198.0
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 196.6
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 196.1
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 194.6
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 193.2
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 192.5
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 187.3
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 187.2
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 184.8
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 183.1
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 181.1
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 180.5
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 179.1
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 177.4
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 175.3
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 171.2
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 171.1
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 170.2
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 167.2
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 166.5
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 165.7
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 164.0
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 163.6
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 159.6
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 158.6
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 152.5
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 151.4
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 149.7
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 144.8
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 137.4
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 135.8
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 134.9
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 133.9
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 128.8
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 121.9
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 116.5
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 115.7
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 114.0
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 112.5
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 108.2
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 98.0
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 97.8
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 96.9
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 95.6
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 93.4
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 91.0
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 90.2
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 77.5
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 75.7
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 70.5
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 67.5
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 66.9
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 52.7
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 46.9
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 42.4
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 40.7
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 37.7
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 37.0
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 35.1
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 34.9
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 31.4
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 30.9
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 26.9
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 26.2
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 24.3
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 10.3
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

481.9
Pig sample Sample description nTPM
Hypothalamus
nTPM: 481.9
Samples: 4

Max nTPM: 596.4
Min nTPM: 416.8
Sample A Female 596.4
Sample B Female 416.8
Sample C Male 430.8
Sample D Male 483.6

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

936.2
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 936.3
Samples: 4

Max nTPM: 995.4
Min nTPM: 816.8
Sample A Male 995.4
Sample B Male 968.2
Sample C Female 964.6
Sample D Female 816.8

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.6
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 11.6
935 Antisense, RP_Baylor_103021, Mouse strain C57BL/6J (56 days, male) 11.6
934 Antisense, RP_Baylor_103021, Mouse strain C57BL/6J (56 days, male) 11.5

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