HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		76.416
RNA expressioni
Consensus:49.0 nTPM
HPA Brain:60.3 nTPM
GTEx:49.0 nTPM
FANTOM5:100.2 Scaled Tags Per Million
Pig:150.2 nTPM
Mouse:179.7 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011893Antibody HPA075062
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected

HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA075062
Hippocampal formation mean intensity 76.416
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 44.978
Molecular layer of the dentate gyrus 0.710
Granular dentate gyrus 10.721
CA1 - oriens layer 4.151
CA1 - pyramidal layer 4.301
CA1 - radiatum layer 1.599
CA2 - oriens layer 0.847
CA2 - pyramidal layer 3.278
CA2 - radiatum layer 0.804
CA3 - oriens layer 0.018
CA3 - pyramidal layer 1.590
CA3 - radiatum layer 0.114
Stratum lucidum 76.416
Lacunosum moleculare 6.765
Subiculum 1.414

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 60.3
Sample id Sample description nTPM
Hippocampus
nTPM: 46.3
1855 Male, age 76, left hemisphere 73.6
2621 Female, age 67, right hemisphere 51.7
2529 Female, age 94, left hemisphere 47.3
1911 Female, age 85, right hemisphere 44.5
1898 Male, age 80, left hemisphere 37.4
2148 Female, age 91, left hemisphere 23.4
Dentate gyrus
nTPM: 45.4
2010 Male, age 76, both hemispheres 85.2
1927 Female, age 91, both hemispheres 50.6
2246 Female, age 85, both hemispheres 38.1
2531 Female, age 67, both hemispheres 38.1
2528 Male, age 74, both hemispheres 32.0
2530 Female, age 94, left hemisphere 28.4
Entorhinal gyrus
nTPM: 40.7
1787 Male, age 76, left hemisphere 48.3
2686 Male, age 75, right hemisphere 42.6
1938 Female, age 85, left hemisphere 40.1
2117 Female, age 91, right hemisphere 37.8
2764 Male, age 80, right hemisphere 37.8
2613 Female, age 94, left hemisphere 37.4
Hippocampus, CA1
nTPM: 53.7
2045 Male, age 76, both hemispheres 88.1
2749 Male, age 80, left hemisphere 55.1
2527 Male, age 74, both hemispheres 53.9
1873 Female, age 85, both hemispheres 37.7
2082 Female, age 91, right hemisphere 33.9
Hippocampus, CA2
nTPM: 39.7
1892 Male, age 76, both hemispheres 67.2
2437 Female, age 94, left hemisphere 47.8
2249 Male, age 74, both hemispheres 46.1
2113 Female, age 91, right hemisphere 31.9
1963 Male, age 80, left hemisphere 23.5
1940 Female, age 85, left hemisphere 21.7
Hippocampus, CA3
nTPM: 46.7
1867 Male, age 76, both hemispheres 68.4
2436 Male, age 74, both hemispheres 60.2
2137 Male, age 80, left hemisphere 49.0
2620 Female, age 94, left hemisphere 41.7
1891 Female, age 85, both hemispheres 38.7
2861 Female, age 67, both hemispheres 22.3
Parahippocampal cortex
nTPM: 52.6
2693 Female, age 94, both hemispheres 93.3
2250 Female, age 67, right hemisphere 87.8
2245 Female, age 91, both hemispheres 74.8
2018 Male, age 76, both hemispheres 47.3
1933 Female, age 85, both hemispheres 46.0
1990 Female, age 91, right hemisphere 42.1
2532 Female, age 72, left hemisphere 42.0
1850 Male, age 80, both hemispheres 37.5
2622 Female, age 67, right hemisphere 29.7
2692 Male, age 74, both hemispheres 25.2
Perirhinal gyrus
nTPM: 60.3
2521 Female, age 94, right hemisphere 77.9
2848 Male, age 76, right hemisphere 65.4
1847 Female, age 91, left hemisphere 61.1
1841 Female, age 85, right hemisphere 54.1
1794 Male, age 80, right hemisphere 43.0
Subiculum
nTPM: 43.8
2438 Female, age 94, left hemisphere 49.8
1977 Female, age 85, both hemispheres 48.5
2042 Male, age 76, both hemispheres 48.3
2619 Male, age 74, both hemispheres 46.9
1901 Male, age 80, both hemispheres 42.9
2729 Female, age 91, right hemisphere 26.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 49.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.0
Samples: 255

Max nTPM: 428.9
Min nTPM: 4.5
Std nTPM: 41.4
Median nTPM: 41.5
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 428.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 297.5
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 202.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 174.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 150.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 130.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 124.7
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 120.3
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 114.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 109.6
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 105.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 100.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 100.2
FF:10169-103B7 60 years, female 145.4
FF:10153-102I9 76 years, female 55.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 150.2
Pig sample Sample description nTPM
Subiculum
nTPM: 104.2
Samples: 4

Max nTPM: 134.9
Min nTPM: 68.9
Sample A Female 134.9
Sample B Female 93.4
Sample C Male 68.9
Sample D Male 119.7
Dorsal hippocampus
nTPM: 79.6
Samples: 4

Max nTPM: 99.1
Min nTPM: 58.2
Sample A Female 79.4
Sample B Female 81.5
Sample C Male 58.2
Sample D Male 99.1
Entorhinal cortex
nTPM: 150.2
Samples: 4

Max nTPM: 172.0
Min nTPM: 132.5
Sample A Female 172.0
Sample B Female 161.0
Sample C Male 132.5
Sample D Male 135.2
Ventral hippocampus
nTPM: 115.1
Samples: 4

Max nTPM: 183.2
Min nTPM: 57.3
Sample A Female 183.2
Sample B Female 93.5
Sample C Male 126.4
Sample D Male 57.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 179.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 155.2
Samples: 4

Max nTPM: 165.3
Min nTPM: 142.1
Sample A Male 158.3
Sample B Male 165.3
Sample C Female 154.9
Sample D Female 142.1
Hippocampal formation
nTPM: 179.7
Samples: 4

Max nTPM: 198.1
Min nTPM: 164.0
Sample A Male 180.9
Sample B Male 198.1
Sample C Female 175.7
Sample D Female 164.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
934 Antisense, RP_Baylor_103021, Mouse strain C57BL/6J (56 days, male) 3.8
935 Antisense, RP_Baylor_103021, Mouse strain C57BL/6J (56 days, male) 2.9

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