MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:190.2 nTPM
HPA Brain:115.5 nTPM
GTEx:190.2 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:40.5 nTPM
Mouse:231.2 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 115.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.1
2411 Female, age 72, unknown 79.0
1827 Male, age 72, unknown 78.2
1833 Male, age 53, unknown 78.2
2219 Male, age 76, both hemispheres 78.2
1870 Female, age 42, unknown 78.0
1830 Male, age 51, unknown 76.4
2019 Male, age 18, unknown 72.7
2828 Female, age 72, unknown 64.0
2666 Male, age 74, left hemisphere 59.6
2586 Male, age 75, left hemisphere 46.9
Dorsal raphe nucleus
nTPM: 83.6
2750 Male, age 76, both hemispheres 90.0
2298 Female, age 72, unknown 85.3
1828 Male, age 53, unknown 84.3
2047 Male, age 72, unknown 80.3
2016 Female, age 72, unknown 77.9
Inferior colliculus
nTPM: 69.5
2849 Male, age 72, unknown 79.7
2097 Female, age 72, unknown 70.1
1848 Female, age 42, unknown 65.6
1890 Male, age 53, unknown 62.7
Median raphe nucleus
nTPM: 115.5
2220 Male, age 76, midline 115.5
Periaquaductal grey, anterior
nTPM: 69.0
1947 Male, age 18, unknown 73.4
1795 Male, age 51, unknown 69.0
2502 Female, age 75, unknown 64.7
Periaquaductal grey, dorsal
nTPM: 74.0
2850 Male, age 76, both hemispheres 106.1
1840 Male, age 53, unknown 69.0
2464 Female, age 72, unknown 61.1
1831 Male, age 72, unknown 59.6
Periaquaductal grey, lateral
nTPM: 76.5
2140 Male, age 76, both hemispheres 82.4
2053 Male, age 18, unknown 73.7
2272 Male, age 74, both hemispheres 73.4
Pretectal area
nTPM: 79.0
2667 Female, age 75, unknown 93.3
2224 Female, age 72, unknown 90.4
1817 Female, age 42, unknown 87.7
1816 Male, age 51, unknown 81.4
2825 Male, age 18, unknown 80.8
1815 Male, age 53, unknown 78.9
2007 Male, age 72, unknown 78.6
1944 Female, age 72, unknown 78.4
2273 Male, age 74, both hemispheres 72.0
2316 Male, age 76, right hemisphere 64.8
2407 Male, age 75, both hemispheres 62.2
Red nucleus
nTPM: 76.4
1821 Female, age 72, unknown 96.7
2725 Female, age 75, unknown 90.5
2823 Male, age 76, right hemisphere 86.8
2503 Female, age 72, unknown 83.8
1954 Female, age 42, unknown 82.5
1904 Male, age 53, unknown 76.2
2227 Male, age 72, unknown 74.2
1865 Male, age 51, unknown 73.9
2769 Male, age 72, unknown 65.0
2588 Male, age 74, left hemisphere 64.1
2785 Male, age 18, unknown 63.7
2584 Male, age 75, left hemisphere 58.9
Substantia nigra
nTPM: 88.7
1916 Female, age 42, unknown 109.6
2241 Male, age 72, unknown 107.5
2409 Female, age 72, unknown 106.3
2699 Male, age 18, unknown 92.3
1941 Male, age 53, unknown 90.9
2665 Male, age 74, both hemispheres 87.7
1851 Male, age 51, unknown 85.0
1889 Female, age 72, unknown 83.2
2590 Female, age 75, unknown 70.1
2583 Male, age 75, right hemisphere 54.7
Superior colliculus
nTPM: 67.3
2587 Male, age 74, left hemisphere 75.4
1895 Male, age 76, right hemisphere 74.4
1913 Female, age 42, unknown 73.4
2087 Female, age 72, unknown 71.1
1839 Male, age 51, unknown 70.4
2261 Male, age 18, unknown 68.2
1796 Male, age 53, unknown 67.3
1995 Male, age 72, unknown 62.3
2668 Female, age 75, unknown 61.9
2664 Male, age 75, both hemispheres 48.1
Ventral tegmental area
nTPM: 83.7
2218 Male, age 76, both hemispheres 99.1
1915 Female, age 42, unknown 87.5
2223 Female, age 72, unknown 86.3
2021 Male, age 53, unknown 79.8
2410 Female, age 72, unknown 76.5
1942 Male, age 51, unknown 73.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 190.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 190.2
Samples: 183

Max nTPM: 319.4
Min nTPM: 106.0
Std nTPM: 37.1
Median nTPM: 186.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 319.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 306.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 287.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 284.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 279.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 275.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 267.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 262.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 256.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 255.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 253.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.0
Samples: 4

Max nTPM: 51.3
Min nTPM: 27.7
Sample A Female 51.3
Sample B Female 31.6
Sample C Male 37.3
Sample D Male 27.7
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 39.2
Min nTPM: 32.2
Sample A Female 39.2
Sample B Female 36.7
Sample C Male 38.7
Sample D Male 32.2
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 44.5
Min nTPM: 30.9
Sample B Female 31.9
Sample C Male 44.5
Sample D Male 30.9
Superior colliculi
nTPM: 40.5
Samples: 4

Max nTPM: 56.8
Min nTPM: 28.2
Sample A Female 41.3
Sample B Female 35.8
Sample C Male 56.8
Sample D Male 28.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 231.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 231.2
Samples: 4

Max nTPM: 244.3
Min nTPM: 224.0
Sample A Male 229.6
Sample B Male 244.3
Sample C Female 226.8
Sample D Female 224.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68861975 Antisense, RP_050301_01_C05, Mouse strain C57BL/6J (56 days, male) 2.3

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