MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA Brain:43.6 nTPM
GTEx:25.6 nTPM
FANTOM5:59.0 Scaled Tags Per Million
Pig:47.0 nTPM
Mouse:29.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.3
2828 Female, age 72, unknown 57.3
2586 Male, age 75, left hemisphere 43.9
1870 Female, age 42, unknown 42.4
1827 Male, age 72, unknown 40.9
2411 Female, age 72, unknown 40.1
2666 Male, age 74, left hemisphere 33.5
1830 Male, age 51, unknown 30.8
1833 Male, age 53, unknown 30.7
2019 Male, age 18, unknown 23.7
2219 Male, age 76, both hemispheres 20.2
Dorsal raphe nucleus
nTPM: 39.4
2016 Female, age 72, unknown 46.1
2298 Female, age 72, unknown 40.1
1828 Male, age 53, unknown 39.7
2047 Male, age 72, unknown 39.1
2750 Male, age 76, both hemispheres 32.0
Inferior colliculus
nTPM: 41.6
2849 Male, age 72, unknown 45.5
1848 Female, age 42, unknown 44.3
2097 Female, age 72, unknown 40.1
1890 Male, age 53, unknown 36.4
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Periaquaductal grey, anterior
nTPM: 38.4
2502 Female, age 75, unknown 48.4
1795 Male, age 51, unknown 43.1
1947 Male, age 18, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 43.6
1840 Male, age 53, unknown 51.9
1831 Male, age 72, unknown 48.2
2464 Female, age 72, unknown 45.5
2850 Male, age 76, both hemispheres 28.6
Periaquaductal grey, lateral
nTPM: 40.4
2053 Male, age 18, unknown 62.5
2140 Male, age 76, both hemispheres 30.4
2272 Male, age 74, both hemispheres 28.2
Pretectal area
nTPM: 35.0
2667 Female, age 75, unknown 56.4
2825 Male, age 18, unknown 43.0
2273 Male, age 74, both hemispheres 37.4
1944 Female, age 72, unknown 37.0
2316 Male, age 76, right hemisphere 35.3
2224 Female, age 72, unknown 35.1
2407 Male, age 75, both hemispheres 34.2
1817 Female, age 42, unknown 28.6
1816 Male, age 51, unknown 28.3
1815 Male, age 53, unknown 28.0
2007 Male, age 72, unknown 21.7
Red nucleus
nTPM: 30.4
2725 Female, age 75, unknown 43.4
2584 Male, age 75, left hemisphere 39.5
2769 Male, age 72, unknown 36.7
2227 Male, age 72, unknown 32.7
2503 Female, age 72, unknown 30.8
2823 Male, age 76, right hemisphere 29.0
1954 Female, age 42, unknown 28.9
1821 Female, age 72, unknown 26.4
2785 Male, age 18, unknown 25.4
1865 Male, age 51, unknown 25.3
2588 Male, age 74, left hemisphere 25.3
1904 Male, age 53, unknown 21.0
Substantia nigra
nTPM: 29.7
1941 Male, age 53, unknown 42.6
2699 Male, age 18, unknown 40.3
2583 Male, age 75, right hemisphere 33.0
1851 Male, age 51, unknown 29.9
2665 Male, age 74, both hemispheres 28.1
2409 Female, age 72, unknown 27.6
1889 Female, age 72, unknown 26.9
1916 Female, age 42, unknown 26.7
2241 Male, age 72, unknown 21.1
2590 Female, age 75, unknown 21.0
Superior colliculus
nTPM: 38.6
2664 Male, age 75, both hemispheres 63.2
1913 Female, age 42, unknown 48.2
1796 Male, age 53, unknown 43.4
1839 Male, age 51, unknown 41.9
2587 Male, age 74, left hemisphere 39.9
1995 Male, age 72, unknown 39.6
2087 Female, age 72, unknown 34.7
2261 Male, age 18, unknown 33.3
1895 Male, age 76, right hemisphere 26.6
2668 Female, age 75, unknown 15.5
Ventral tegmental area
nTPM: 31.7
1942 Male, age 51, unknown 36.4
2223 Female, age 72, unknown 33.6
1915 Female, age 42, unknown 33.3
2021 Male, age 53, unknown 32.3
2410 Female, age 72, unknown 28.5
2218 Male, age 76, both hemispheres 26.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 65.8
Min nTPM: 6.3
Std nTPM: 10.4
Median nTPM: 24.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 65.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 53.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 49.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 48.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.3
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 46.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 45.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 44.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 43.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.0
FF:10158-103A5 76 years, female 59.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.7
Samples: 4

Max nTPM: 53.0
Min nTPM: 18.7
Sample A Female 41.5
Sample B Female 18.7
Sample C Male 33.4
Sample D Male 53.0
Midbrain
nTPM: 47.0
Samples: 4

Max nTPM: 118.7
Min nTPM: 20.1
Sample A Female 118.7
Sample B Female 26.0
Sample C Male 20.1
Sample D Male 23.1
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 26.0
Min nTPM: 22.7
Sample B Female 26.0
Sample C Male 22.7
Sample D Male 23.3
Superior colliculi
nTPM: 28.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 11.2
Sample A Female 33.7
Sample B Female 11.2
Sample C Male 30.3
Sample D Male 36.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 31.1
Min nTPM: 28.9
Sample A Male 28.9
Sample B Male 29.5
Sample C Female 29.5
Sample D Female 31.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
67850953 Antisense, RP_041018_01_A12, Mouse strain C57BL/6J (56 days, male) 0.3
100144108 Antisense, RP_110421_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org