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  • PGAM1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:258.5 nTPM
HPA Brain:237.8 nTPM
GTEx:258.5 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Mouse:619.5 nTPM
Allen mouse:28.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.8
Sample id Sample description nTPM
Amygdala
nTPM: 237.8
2814 Male, age 76, right hemisphere 291.9
2695 Female, age 67, right hemisphere 258.0
1987 Female, age 91, left hemisphere 228.5
2514 Male, age 75, right hemisphere 214.5
2517 Female, age 94, left hemisphere 195.9
Basal amygdala
nTPM: 195.2
2110 Male, age 80, left hemisphere 230.8
2609 Male, age 75, right hemisphere 227.3
2243 Female, age 91, right hemisphere 218.0
1955 Male, age 76, both hemispheres 207.7
2685 Female, age 94, left hemisphere 177.3
2827 Female, age 67, right hemisphere 110.3
Central amygdala
nTPM: 234.1
1905 Male, age 76, both hemispheres 293.3
2515 Male, age 75, right hemisphere 238.5
2239 Male, age 80, left hemisphere 227.4
2826 Female, age 94, left hemisphere 220.7
2701 Female, age 91, right hemisphere 190.3
Corticomedial amygdala
nTPM: 205.6
2829 Male, age 80, left hemisphere 260.5
2428 Male, age 75, right hemisphere 234.4
2242 Female, age 91, right hemisphere 218.9
2429 Female, age 94, left hemisphere 201.5
2240 Male, age 76, both hemispheres 183.3
2535 Female, age 67, right hemisphere 134.9
Lateral amygdala
nTPM: 203.8
1883 Male, age 76, both hemispheres 280.5
2516 Male, age 75, right hemisphere 237.3
2534 Female, age 94, left hemisphere 232.7
2255 Female, age 91, right hemisphere 187.9
2256 Male, age 80, left hemisphere 154.6
2830 Female, age 67, right hemisphere 129.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 258.5
Samples: 181

Max nTPM: 565.0
Min nTPM: 117.9
Std nTPM: 76.2
Median nTPM: 255.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 565.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 521.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 494.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 448.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 424.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 414.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 408.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 407.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 403.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 394.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 392.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 381.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 365.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 358.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 356.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 350.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 348.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 347.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 345.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 345.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 343.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 342.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 340.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 339.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 338.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 337.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 331.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 330.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 330.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 328.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 326.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 324.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 321.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 319.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 317.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 317.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 316.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 313.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 312.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 311.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 308.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 306.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 303.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 303.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 302.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 300.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 299.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 299.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 299.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 298.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 295.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 294.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 291.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 288.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 287.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 287.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 286.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 286.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 286.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 284.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 284.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 283.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 283.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 281.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 280.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 278.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 277.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 276.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 275.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 275.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 274.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 273.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 273.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 271.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 267.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 267.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 267.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 267.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 266.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 264.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 264.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 263.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 263.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 263.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 262.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 261.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 260.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 260.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 260.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 258.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 255.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 254.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 252.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 251.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 251.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 247.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 247.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 245.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 243.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 243.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 241.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 240.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 238.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 237.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 236.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 233.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 233.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 232.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 231.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 228.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 228.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 226.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 226.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 224.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 223.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 223.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 222.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 222.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 219.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 218.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 217.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 216.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 216.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 215.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 213.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 213.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 213.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 212.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 212.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 212.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 211.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 208.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 207.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 207.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 206.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 204.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 204.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 204.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 201.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 200.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 198.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 198.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 197.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 196.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 196.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 193.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 188.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 185.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 185.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 183.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 182.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 181.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 180.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 177.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 176.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 175.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 173.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 173.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 171.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 169.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 166.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 163.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 163.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 161.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 159.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 158.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 157.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 156.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 154.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 153.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 153.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 152.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 151.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 146.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 141.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 139.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 125.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 121.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 117.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 48.9
FF:10151-102I7 76 years, female 48.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

619.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 619.6
Samples: 4

Max nTPM: 648.2
Min nTPM: 599.5
Sample A Male 648.2
Sample B Male 608.9
Sample C Female 621.6
Sample D Female 599.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

28.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.8
513469 Antisense, RP_040810_01_F11, Mouse strain C57BL/6J (56 days, male) 28.8

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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