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  • PGAM1
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:390.1 nTPM
GTEx:390.1 nTPM
FANTOM5:47.5 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

390.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 390.1
Samples: 105

Max nTPM: 688.1
Min nTPM: 252.1
Std nTPM: 92.8
Median nTPM:
218_1 71 years, female 688.1
386_1 76 years, male 633.5
6_1 73 years, female 626.6
379_1 60 years, male 625.0
347_1 72 years, male 623.6
375_1 74 years, female 622.0
322_1 76 years, male 584.1
307_1 66 years, female 573.8
42_1 85 years, male 548.1
145_1 84 years, male 543.6
35_1 74 years, female 525.0
173_1 67 years, male 516.7
447_1 81 years, male 510.5
316_1 62 years, male 510.1
4_1 88 years, female 480.3
17_1 71 years, male 472.8
117_1 61 years, male 461.7
2_1 77 years, female 459.6
237_1 82 years, male 450.8
321_1 62 years, female 447.0
377_1 82 years, female 445.5
319_1 81 years, male 440.9
384_1 83 years, male 437.0
18_1 88 years, male 433.8
518_1 75 years, female 429.1
350_1 84 years, female 426.8
120_1 70 years, female 426.1
139_1 64 years, female 424.9
506_1 65 years, male 424.6
491_1 89 years, female 423.5
490_1 67 years, female 422.8
308_1 70 years, female 418.9
311_1 78 years, male 417.1
318_1 68 years, male 414.3
354_1 81 years, female 414.0
495_1 57 years, female 412.0
243_1 75 years, male 406.2
126_1 63 years, male 405.5
119_1 70 years, female 404.9
43_1 64 years, female 399.9
324_1 76 years, male 393.4
142_1 61 years, female 392.6
153_1 70 years, female 386.9
353_1 82 years, female 385.7
389_1 86 years, female 385.0
317_1 60 years, male 383.8
41_1 94 years, female 381.7
405_1 91 years, male 381.1
315_1 62 years, female 380.1
115_1 83 years, male 379.6
396_1 62 years, male 378.1
351_1 91 years, male 375.2
526_1 61 years, male 374.6
348_1 84 years, male 374.2
295_1 61 years, female 372.4
291_1 76 years, male 369.2
355_1 70 years, female 367.0
81_1 67 years, male 365.4
452_1 88 years, female 364.1
320_1 89 years, female 361.9
99_1 64 years, male 356.9
501_1 88 years, male 356.8
376_1 75 years, female 355.2
177_1 74 years, male 354.5
163_1 78 years, male 346.1
335_1 73 years, female 343.4
425_1 59 years, female 337.9
172_1 72 years, female 337.1
313_1 79 years, female 336.6
352_1 62 years, male 335.3
404_1 82 years, female 335.0
468_1 89 years, male 334.5
109_1 81 years, female 331.3
217_1 76 years, male 328.6
189_1 76 years, male 324.1
246_1 77 years, male 322.2
265_1 87 years, male 321.6
349_1 83 years, male 320.9
254_1 77 years, female 318.2
499_1 55 years, female 316.8
293_1 68 years, female 313.6
406_1 79 years, male 313.1
480_1 63 years, male 312.2
356_1 87 years, female 311.6
264_1 73 years, female 310.6
415_1 77 years, female 307.9
292_1 71 years, male 306.7
162_1 79 years, female 303.8
89_1 63 years, male 302.2
414_1 84 years, female 299.6
413_1 59 years, female 296.9
266_1 85 years, male 296.6
9_1 66 years, female 295.3
286_1 68 years, female 294.8
466_1 57 years, female 294.3
503_1 68 years, male 293.6
314_1 67 years, male 293.3
229_1 69 years, female 288.0
517_1 88 years, male 287.3
251_1 78 years, male 286.3
32_1 67 years, male 282.4
137_1 83 years, male 276.3
394_1 75 years, female 276.2
288_1 66 years, female 273.3
149_1 88 years, male 252.1
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 47.5
FF:10030-101E3 24-65 years, mixed 47.5

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