MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA Brain:29.5 nTPM
GTEx:5.5 nTPM
FANTOM5:5.4 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:9.3 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.4
2828 Female, age 72, unknown 22.0
1827 Male, age 72, unknown 18.9
2666 Male, age 74, left hemisphere 18.9
2019 Male, age 18, unknown 14.2
1830 Male, age 51, unknown 11.4
2411 Female, age 72, unknown 11.2
2219 Male, age 76, both hemispheres 11.0
1833 Male, age 53, unknown 10.2
1870 Female, age 42, unknown 9.6
2586 Male, age 75, left hemisphere 7.1
Dorsal raphe nucleus
nTPM: 10.3
2298 Female, age 72, unknown 14.1
2047 Male, age 72, unknown 13.2
2016 Female, age 72, unknown 9.4
2750 Male, age 76, both hemispheres 8.9
1828 Male, age 53, unknown 6.2
Inferior colliculus
nTPM: 13.6
1848 Female, age 42, unknown 22.5
2849 Male, age 72, unknown 15.5
2097 Female, age 72, unknown 10.0
1890 Male, age 53, unknown 6.3
Median raphe nucleus
nTPM: 18.3
2220 Male, age 76, midline 18.3
Periaquaductal grey, anterior
nTPM: 29.5
1947 Male, age 18, unknown 45.1
2502 Female, age 75, unknown 23.9
1795 Male, age 51, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 14.3
2464 Female, age 72, unknown 18.1
2850 Male, age 76, both hemispheres 14.1
1840 Male, age 53, unknown 13.6
1831 Male, age 72, unknown 11.3
Periaquaductal grey, lateral
nTPM: 14.2
2053 Male, age 18, unknown 16.0
2140 Male, age 76, both hemispheres 14.7
2272 Male, age 74, both hemispheres 11.9
Pretectal area
nTPM: 19.3
1816 Male, age 51, unknown 31.3
1817 Female, age 42, unknown 24.6
1815 Male, age 53, unknown 19.4
2825 Male, age 18, unknown 19.0
2007 Male, age 72, unknown 18.7
2224 Female, age 72, unknown 18.5
1944 Female, age 72, unknown 17.7
2316 Male, age 76, right hemisphere 17.5
2667 Female, age 75, unknown 17.2
2273 Male, age 74, both hemispheres 16.3
2407 Male, age 75, both hemispheres 12.4
Red nucleus
nTPM: 21.9
2503 Female, age 72, unknown 37.0
1954 Female, age 42, unknown 32.1
2823 Male, age 76, right hemisphere 31.7
1865 Male, age 51, unknown 25.9
1821 Female, age 72, unknown 22.7
1904 Male, age 53, unknown 21.9
2227 Male, age 72, unknown 17.2
2769 Male, age 72, unknown 17.2
2588 Male, age 74, left hemisphere 17.1
2725 Female, age 75, unknown 16.2
2785 Male, age 18, unknown 12.6
2584 Male, age 75, left hemisphere 10.4
Substantia nigra
nTPM: 12.3
1941 Male, age 53, unknown 39.6
1889 Female, age 72, unknown 17.3
2590 Female, age 75, unknown 15.7
2665 Male, age 74, both hemispheres 14.9
2583 Male, age 75, right hemisphere 9.8
2241 Male, age 72, unknown 7.7
2699 Male, age 18, unknown 5.3
1851 Male, age 51, unknown 4.8
2409 Female, age 72, unknown 4.7
1916 Female, age 42, unknown 3.1
Superior colliculus
nTPM: 17.4
2087 Female, age 72, unknown 23.7
1895 Male, age 76, right hemisphere 22.9
2261 Male, age 18, unknown 22.4
1839 Male, age 51, unknown 18.0
2668 Female, age 75, unknown 16.7
1796 Male, age 53, unknown 16.6
1995 Male, age 72, unknown 14.9
1913 Female, age 42, unknown 13.7
2587 Male, age 74, left hemisphere 12.6
2664 Male, age 75, both hemispheres 12.3
Ventral tegmental area
nTPM: 12.7
2410 Female, age 72, unknown 18.8
2218 Male, age 76, both hemispheres 16.4
1942 Male, age 51, unknown 15.9
2021 Male, age 53, unknown 10.1
1915 Female, age 42, unknown 7.7
2223 Female, age 72, unknown 7.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.5
Samples: 139

Max nTPM: 57.2
Min nTPM: 0.2
Std nTPM: 6.0
Median nTPM: 3.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 23.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 22.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 16.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 16.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 11.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 9.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 9.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 9.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.4
FF:10158-103A5 76 years, female 5.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 12.9
Min nTPM: 4.0
Sample A Female 12.1
Sample B Female 5.9
Sample C Male 12.9
Sample D Male 4.0
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 10.6
Sample C Male 13.5
Sample D Male 12.5
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 8.1
Min nTPM: 7.7
Sample B Female 7.7
Sample C Male 8.1
Sample D Male 7.9
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 12.9
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 12.9
Sample C Male 9.6
Sample D Male 11.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.2
Sample A Male 9.5
Sample B Male 8.2
Sample C Female 10.1
Sample D Female 9.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
528 Antisense, RP_Baylor_253919, Mouse strain C57BL/6J (56 days, male) 3.5
79589522 Antisense, RP_071204_02_F04, Mouse strain C57BL/6J (56 days, male) 3.5
75749751 Antisense, RP_060518_02_E09, Mouse strain C57BL/6J (56 days, male) 3.4
527 Antisense, RP_Baylor_253919, Mouse strain C57BL/6J (56 days, male) 2.0
81790730 Antisense, RP_090820_01_A02, Mouse strain C57BL/6J (56 days, male) 1.6
529 Sense, RPS_Baylor_37133, Mouse strain C57BL/6J (56 days, male) 0.0

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