MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.3 nTPM
HPA Brain:162.4 nTPM
GTEx:74.3 nTPM
FANTOM5:411.9 Scaled Tags Per Million
Pig:73.9 nTPM
Mouse:99.2 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 162.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.2
2019 Male, age 18, unknown 156.1
1870 Female, age 42, unknown 152.3
1833 Male, age 53, unknown 146.6
1830 Male, age 51, unknown 145.6
2411 Female, age 72, unknown 144.7
2586 Male, age 75, left hemisphere 136.1
2828 Female, age 72, unknown 129.2
2666 Male, age 74, left hemisphere 109.9
2219 Male, age 76, both hemispheres 106.4
1827 Male, age 72, unknown 94.9
Dorsal raphe nucleus
nTPM: 125.0
2750 Male, age 76, both hemispheres 178.5
1828 Male, age 53, unknown 127.8
2047 Male, age 72, unknown 121.1
2016 Female, age 72, unknown 110.1
2298 Female, age 72, unknown 87.3
Inferior colliculus
nTPM: 114.3
1848 Female, age 42, unknown 129.3
1890 Male, age 53, unknown 125.7
2097 Female, age 72, unknown 112.9
2849 Male, age 72, unknown 89.3
Median raphe nucleus
nTPM: 111.6
2220 Male, age 76, midline 111.6
Periaquaductal grey, anterior
nTPM: 101.4
2502 Female, age 75, unknown 119.5
1947 Male, age 18, unknown 95.2
1795 Male, age 51, unknown 89.6
Periaquaductal grey, dorsal
nTPM: 90.2
2464 Female, age 72, unknown 113.2
1831 Male, age 72, unknown 90.8
1840 Male, age 53, unknown 80.3
2850 Male, age 76, both hemispheres 76.7
Periaquaductal grey, lateral
nTPM: 88.1
2053 Male, age 18, unknown 106.4
2272 Male, age 74, both hemispheres 80.3
2140 Male, age 76, both hemispheres 77.6
Pretectal area
nTPM: 116.4
1817 Female, age 42, unknown 142.1
2667 Female, age 75, unknown 141.6
1815 Male, age 53, unknown 135.5
2007 Male, age 72, unknown 123.3
1816 Male, age 51, unknown 117.4
1944 Female, age 72, unknown 117.3
2316 Male, age 76, right hemisphere 111.2
2407 Male, age 75, both hemispheres 106.2
2273 Male, age 74, both hemispheres 100.9
2825 Male, age 18, unknown 98.8
2224 Female, age 72, unknown 86.5
Red nucleus
nTPM: 162.4
1904 Male, age 53, unknown 192.2
2227 Male, age 72, unknown 185.2
1821 Female, age 72, unknown 182.9
1865 Male, age 51, unknown 182.7
2769 Male, age 72, unknown 180.9
2823 Male, age 76, right hemisphere 178.2
1954 Female, age 42, unknown 170.9
2503 Female, age 72, unknown 167.3
2588 Male, age 74, left hemisphere 152.9
2785 Male, age 18, unknown 150.9
2584 Male, age 75, left hemisphere 108.9
2725 Female, age 75, unknown 95.4
Substantia nigra
nTPM: 114.8
1889 Female, age 72, unknown 137.5
2583 Male, age 75, right hemisphere 127.5
1851 Male, age 51, unknown 123.8
2409 Female, age 72, unknown 118.8
2699 Male, age 18, unknown 118.0
1916 Female, age 42, unknown 113.1
2241 Male, age 72, unknown 109.1
2665 Male, age 74, both hemispheres 101.3
2590 Female, age 75, unknown 100.8
1941 Male, age 53, unknown 98.0
Superior colliculus
nTPM: 124.8
2668 Female, age 75, unknown 159.0
1995 Male, age 72, unknown 155.9
1913 Female, age 42, unknown 151.5
2087 Female, age 72, unknown 128.2
2587 Male, age 74, left hemisphere 119.3
2664 Male, age 75, both hemispheres 114.0
1839 Male, age 51, unknown 113.5
1895 Male, age 76, right hemisphere 106.9
2261 Male, age 18, unknown 105.9
1796 Male, age 53, unknown 93.5
Ventral tegmental area
nTPM: 123.7
2223 Female, age 72, unknown 167.5
2410 Female, age 72, unknown 143.1
2218 Male, age 76, both hemispheres 113.1
2021 Male, age 53, unknown 110.9
1942 Male, age 51, unknown 104.4
1915 Female, age 42, unknown 103.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.3
Samples: 139

Max nTPM: 223.3
Min nTPM: 26.9
Std nTPM: 29.7
Median nTPM: 72.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 223.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 175.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 159.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 150.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 143.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 131.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 128.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 124.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 123.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 119.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 411.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 411.9
FF:10158-103A5 76 years, female 411.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.5
Samples: 4

Max nTPM: 79.0
Min nTPM: 64.7
Sample A Female 68.4
Sample B Female 64.7
Sample C Male 74.0
Sample D Male 79.0
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 92.0
Min nTPM: 48.9
Sample A Female 92.0
Sample B Female 83.3
Sample C Male 71.6
Sample D Male 48.9
Periaqueductal gray
nTPM: 69.1
Samples: 3

Max nTPM: 80.6
Min nTPM: 56.8
Sample B Female 80.6
Sample C Male 70.0
Sample D Male 56.8
Superior colliculi
nTPM: 57.4
Samples: 4

Max nTPM: 68.3
Min nTPM: 42.6
Sample A Female 54.5
Sample B Female 42.6
Sample C Male 64.1
Sample D Male 68.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 99.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.2
Samples: 4

Max nTPM: 114.2
Min nTPM: 87.7
Sample A Male 87.7
Sample B Male 88.4
Sample C Female 114.2
Sample D Female 106.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69236712 Antisense, RP_050331_01_A02, Mouse strain C57BL/6J (56 days, male) 1.3
74724530 Antisense, RP_060220_04_A02, Mouse strain C57BL/6J (56 days, male) 0.2

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