MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.7 nTPM
HPA Brain:14.3 nTPM
GTEx:2.7 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:30.7 nTPM
Mouse:28.1 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.9
2019 Male, age 18, unknown 7.7
2219 Male, age 76, both hemispheres 6.3
1833 Male, age 53, unknown 4.0
2828 Female, age 72, unknown 4.0
1827 Male, age 72, unknown 3.9
1830 Male, age 51, unknown 3.7
2586 Male, age 75, left hemisphere 3.4
2666 Male, age 74, left hemisphere 2.6
2411 Female, age 72, unknown 1.8
1870 Female, age 42, unknown 1.5
Dorsal raphe nucleus
nTPM: 2.4
1828 Male, age 53, unknown 3.5
2047 Male, age 72, unknown 2.6
2298 Female, age 72, unknown 2.0
2016 Female, age 72, unknown 1.9
2750 Male, age 76, both hemispheres 1.8
Inferior colliculus
nTPM: 14.3
1890 Male, age 53, unknown 21.1
2097 Female, age 72, unknown 17.1
1848 Female, age 42, unknown 11.1
2849 Male, age 72, unknown 7.6
Median raphe nucleus
nTPM: 2.0
2220 Male, age 76, midline 2.0
Periaquaductal grey, anterior
nTPM: 2.6
2502 Female, age 75, unknown 5.0
1947 Male, age 18, unknown 1.5
1795 Male, age 51, unknown 1.2
Periaquaductal grey, dorsal
nTPM: 2.7
2464 Female, age 72, unknown 4.6
1831 Male, age 72, unknown 2.6
2850 Male, age 76, both hemispheres 1.9
1840 Male, age 53, unknown 1.7
Periaquaductal grey, lateral
nTPM: 2.1
2272 Male, age 74, both hemispheres 2.8
2140 Male, age 76, both hemispheres 1.9
2053 Male, age 18, unknown 1.7
Pretectal area
nTPM: 6.1
1816 Male, age 51, unknown 15.0
1817 Female, age 42, unknown 9.8
2007 Male, age 72, unknown 9.7
1815 Male, age 53, unknown 7.2
1944 Female, age 72, unknown 5.9
2316 Male, age 76, right hemisphere 4.9
2667 Female, age 75, unknown 4.5
2407 Male, age 75, both hemispheres 3.9
2273 Male, age 74, both hemispheres 2.2
2825 Male, age 18, unknown 2.1
2224 Female, age 72, unknown 2.0
Red nucleus
nTPM: 6.2
2785 Male, age 18, unknown 8.6
2823 Male, age 76, right hemisphere 8.3
1954 Female, age 42, unknown 7.8
2227 Male, age 72, unknown 7.1
2769 Male, age 72, unknown 6.8
2503 Female, age 72, unknown 6.7
1865 Male, age 51, unknown 6.5
1821 Female, age 72, unknown 6.2
1904 Male, age 53, unknown 5.8
2588 Male, age 74, left hemisphere 5.3
2584 Male, age 75, left hemisphere 3.0
2725 Female, age 75, unknown 2.9
Substantia nigra
nTPM: 2.3
1889 Female, age 72, unknown 7.0
2665 Male, age 74, both hemispheres 3.6
2590 Female, age 75, unknown 2.7
2583 Male, age 75, right hemisphere 2.0
2699 Male, age 18, unknown 1.5
1941 Male, age 53, unknown 1.4
1851 Male, age 51, unknown 1.1
1916 Female, age 42, unknown 1.1
2409 Female, age 72, unknown 1.1
2241 Male, age 72, unknown 1.0
Superior colliculus
nTPM: 5.5
1895 Male, age 76, right hemisphere 11.0
2087 Female, age 72, unknown 9.4
2261 Male, age 18, unknown 6.7
1839 Male, age 51, unknown 4.7
1995 Male, age 72, unknown 4.6
2668 Female, age 75, unknown 4.1
1913 Female, age 42, unknown 4.0
2664 Male, age 75, both hemispheres 3.8
1796 Male, age 53, unknown 3.3
2587 Male, age 74, left hemisphere 3.2
Ventral tegmental area
nTPM: 1.7
2410 Female, age 72, unknown 3.4
2218 Male, age 76, both hemispheres 1.8
2223 Female, age 72, unknown 1.8
1915 Female, age 42, unknown 1.2
1942 Male, age 51, unknown 0.9
2021 Male, age 53, unknown 0.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.7
Samples: 139

Max nTPM: 13.9
Min nTPM: 0.3
Std nTPM: 1.8
Median nTPM: 2.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 13.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 9.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 7.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 6.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 6.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 5.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 5.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 5.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 5.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 4.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 26.5
Min nTPM: 17.0
Sample A Female 26.5
Sample B Female 17.0
Sample C Male 23.9
Sample D Male 20.0
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 31.7
Min nTPM: 21.4
Sample A Female 26.9
Sample B Female 21.4
Sample C Male 24.1
Sample D Male 31.7
Periaqueductal gray
nTPM: 19.9
Samples: 3

Max nTPM: 21.7
Min nTPM: 18.1
Sample B Female 18.1
Sample C Male 21.7
Sample D Male 19.8
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 41.7
Min nTPM: 18.2
Sample A Female 41.7
Sample B Female 18.2
Sample C Male 29.4
Sample D Male 33.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 30.0
Min nTPM: 26.6
Sample A Male 30.0
Sample B Male 28.7
Sample C Female 27.2
Sample D Female 26.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
71608196 Antisense, RP_050927_01_A02, Mouse strain C57BL/6J (56 days, male) 7.6
73817925 Antisense, RP_050927_01_A02, Mouse strain C57BL/6J (56 days, male) 6.9

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