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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
561.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 252.7
2301
Female, age 85, both hemispheres
278.2
2188
Female, age 91, both hemispheres
266.1
1984
Male, age 76, both hemispheres
255.7
2090
Male, age 80, both hemispheres
210.8
Dorsal cochlear nucleus nTPM: 260.8
2187
Female, age 91, both hemispheres
292.8
2058
Male, age 76, both hemispheres
284.2
2802
Male, age 74, right hemisphere
272.5
2370
Male, age 61, both hemispheres
257.8
2378
Male, age 80, both hemispheres
196.9
Dorsal tegmental nucleus nTPM: 280.9
2083
Male, age 80, both hemispheres
328.9
1936
Male, age 76, left hemisphere
279.0
2326
Male, age 74, both hemispheres
259.3
2358
Male, age 61, both hemispheres
256.2
Dorsolateral tegmental area nTPM: 265.1
2654
Male, age 80, both hemispheres
345.5
2751
Female, age 85, both hemispheres
290.6
2141
Male, age 76, both hemispheres
282.2
2360
Male, age 74, both hemispheres
239.1
2337
Male, age 61, both hemispheres
167.9
Kolliker-Fuse nucleus nTPM: 352.6
2163
Male, age 80, both hemispheres
516.5
2793
Female, age 91, left hemisphere
320.7
2315
Male, age 76, right hemisphere
220.5
Lateral lemniscal nuclei nTPM: 478.6
2169
Male, age 76, both hemispheres
591.2
2036
Male, age 80, both hemispheres
529.4
2453
Male, age 74, right hemisphere
510.7
2746
Female, age 85, left hemisphere
463.7
2320
Female, age 91, left hemisphere
298.2
Lateral parabrachial nucleus nTPM: 344.6
2139
Female, age 85, right hemisphere
524.0
2790
Male, age 61, both hemispheres
340.5
2013
Male, age 80, both hemispheres
332.5
2792
Male, age 76, both hemispheres
181.3
Lateral vestibular nucleus nTPM: 358.3
2184
Male, age 76, both hemispheres
459.0
2311
Male, age 80, both hemispheres
257.6
Locus coeruleus nTPM: 495.7
2720
Male, age 74, both hemispheres
629.8
2123
Female, age 91, both hemispheres
613.0
2014
Male, age 55, unknown
545.6
2317
Female, age 72, unknown
435.9
2788
Male, age 74, unknown
431.9
1980
Male, age 76, both hemispheres
413.6
2162
Male, age 80, both hemispheres
399.8
Medial parabrachial nucleus nTPM: 315.0
2854
Male, age 80, both hemispheres
381.0
2156
Male, age 61, both hemispheres
355.3
2170
Female, age 91, both hemispheres
312.1
2786
Male, age 76, both hemispheres
287.5
2463
Female, age 85, right hemisphere
239.0
Medial periolivary nuclei nTPM: 451.7
2171
Female, age 85, both hemispheres
701.4
2063
Male, age 76, both hemispheres
613.1
2791
Male, age 74, right hemisphere
416.9
2081
Male, age 80, both hemispheres
281.1
2458
Female, age 91, both hemispheres
246.0
Motor facial nucleus nTPM: 439.1
2062
Male, age 76, both hemispheres
641.4
2365
Male, age 74, right hemisphere
496.2
2327
Male, age 80, both hemispheres
452.5
2697
Female, age 85, both hemispheres
431.6
2126
Male, age 61, both hemispheres
335.6
2795
Female, age 91, both hemispheres
277.6
Motor trigeminal nucleus nTPM: 339.4
2079
Male, age 80, both hemispheres
455.5
2560
Male, age 74, both hemispheres
363.4
2309
Male, age 76, both hemispheres
320.0
2335
Male, age 61, both hemispheres
306.0
2321
Female, age 91, both hemispheres
252.1
Nuclei of the trapezoid body nTPM: 522.5
2159
Male, age 61, both hemispheres
722.5
2735
Female, age 85, both hemispheres
678.0
1983
Male, age 76, both hemispheres
549.9
2166
Male, age 80, both hemispheres
389.5
2368
Female, age 91, both hemispheres
272.4
Nucleus raphe magnus nTPM: 561.0
2160
Male, age 61, both hemispheres
872.4
2172
Female, age 85, both hemispheres
719.0
2455
Male, age 74, both hemispheres
630.0
2328
Male, age 80, both hemispheres
427.3
2051
Male, age 76, both hemispheres
414.3
2459
Female, age 91, both hemispheres
302.8
Paramedian reticular nucleus nTPM: 454.8
2050
Female, age 85, both hemispheres
588.3
2313
Male, age 61, both hemispheres
467.0
2057
Male, age 80, both hemispheres
461.9
2052
Male, age 76, both hemispheres
302.3
Pedunculopontine tegmental nucleus nTPM: 324.3
1921
Female, age 85, both hemispheres
356.5
2334
Male, age 80, both hemispheres
337.5
2338
Male, age 61, both hemispheres
278.9
Pontine nuclei nTPM: 538.9
2727
Male, age 61, right hemisphere
801.1
1863
Male, age 55, unknown
704.5
2787
Female, age 85, both hemispheres
681.7
2109
Female, age 72, unknown
586.2
1968
Male, age 76, left hemisphere
517.8
2454
Male, age 74, left hemisphere
431.4
2115
Male, age 80, left hemisphere
309.2
2319
Female, age 91, both hemispheres
279.2
Pontine raphe nucleus nTPM: 456.3
2122
Female, age 85, midline
569.0
2853
Male, age 76, midline
343.7
Posteroventral cochlear nucleus nTPM: 268.7
2752
Female, age 85, both hemispheres
456.8
2070
Male, age 76, both hemispheres
334.1
2371
Male, age 61, both hemispheres
233.5
2341
Male, age 80, both hemispheres
171.5
2135
Female, age 91, both hemispheres
147.5
Principal sensory trigeminal nucleus nTPM: 484.6
2158
Male, age 61, both hemispheres
706.6
2008
Male, age 80, left hemisphere
552.5
2324
Male, age 76, both hemispheres
393.3
2367
Female, age 91, left hemisphere
285.8
Reticular pontine nucleus, caudal nTPM: 366.8
2332
Male, age 80, right hemisphere
472.2
2092
Male, age 76, both hemispheres
420.0
2559
Male, age 74, both hemispheres
318.1
2457
Female, age 91, both hemispheres
257.0
Reticular pontine nucleus, oral nTPM: 377.0
2012
Female, age 85, both hemispheres
504.9
2361
Male, age 74, both hemispheres
502.7
1939
Male, age 80, both hemispheres
325.7
2167
Male, age 76, both hemispheres
289.0
2366
Female, age 91, both hemispheres
262.5
Reticulotegmental nucleus nTPM: 363.7
2325
Male, age 76, both hemispheres
462.9
2452
Male, age 74, both hemispheres
359.5
2333
Male, age 80, both hemispheres
326.4
2322
Female, age 91, both hemispheres
306.1
Spinal trigeminal nucleus, oral nTPM: 382.9
2737
Female, age 85, both hemispheres
427.5
2164
Male, age 80, both hemispheres
424.5
1978
Male, age 76, both hemispheres
296.6
Subcoeruleus area nTPM: 363.5
1958
Male, age 80, both hemispheres
449.2
2089
Male, age 76, left hemisphere
425.8
2323
Female, age 91, left hemisphere
420.8
2451
Male, age 74, both hemispheres
279.0
2369
Female, age 85, left hemisphere
242.5
Superior olive nTPM: 443.9
1875
Female, age 85, both hemispheres
662.0
2364
Male, age 74, right hemisphere
439.3
2020
Male, age 76, both hemispheres
427.1
2329
Male, age 80, right hemisphere
377.2
2561
Female, age 91, both hemispheres
314.1
Ventral periolivary nuclei nTPM: 474.8
2130
Female, age 85, both hemispheres
601.5
2165
Male, age 80, both hemispheres
524.6
2023
Male, age 76, both hemispheres
408.7
2794
Female, age 91, left hemisphere
364.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 379.8
2449
Male, age 74, both hemispheres
547.5
2840
Female, age 85, both hemispheres
431.0
1959
Male, age 76, both hemispheres
422.0
2161
Male, age 80, both hemispheres
368.2
2359
Male, age 61, both hemispheres
303.2
2456
Female, age 91, both hemispheres
206.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
414.8
Pig sample
Sample description
nTPM
Pons nTPM: 414.8
Samples: 4
Max nTPM: 529.2
Min nTPM: 302.1
Sample A
Female
529.2
Sample B
Female
302.1
Sample C
Male
388.1
Sample D
Male
439.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.