MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.6 nTPM
HPA Brain:16.0 nTPM
GTEx:11.6 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Mouse:10.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
2411 Female, age 72, unknown 16.0
2019 Male, age 18, unknown 15.1
1827 Male, age 72, unknown 15.0
2219 Male, age 76, both hemispheres 14.3
2666 Male, age 74, left hemisphere 14.3
1870 Female, age 42, unknown 13.7
1833 Male, age 53, unknown 13.5
1830 Male, age 51, unknown 12.3
2828 Female, age 72, unknown 11.6
2586 Male, age 75, left hemisphere 8.9
Dorsal raphe nucleus
nTPM: 14.2
2298 Female, age 72, unknown 15.8
2047 Male, age 72, unknown 14.4
2750 Male, age 76, both hemispheres 14.4
1828 Male, age 53, unknown 13.3
2016 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 14.1
2097 Female, age 72, unknown 15.6
1890 Male, age 53, unknown 14.3
2849 Male, age 72, unknown 13.7
1848 Female, age 42, unknown 12.8
Median raphe nucleus
nTPM: 16.0
2220 Male, age 76, midline 16.0
Periaquaductal grey, anterior
nTPM: 14.4
2502 Female, age 75, unknown 15.7
1947 Male, age 18, unknown 14.4
1795 Male, age 51, unknown 13.1
Periaquaductal grey, dorsal
nTPM: 13.4
1840 Male, age 53, unknown 15.1
2464 Female, age 72, unknown 14.3
1831 Male, age 72, unknown 12.5
2850 Male, age 76, both hemispheres 12.0
Periaquaductal grey, lateral
nTPM: 12.7
2272 Male, age 74, both hemispheres 15.1
2053 Male, age 18, unknown 12.9
2140 Male, age 76, both hemispheres 10.0
Pretectal area
nTPM: 15.2
1816 Male, age 51, unknown 18.2
2007 Male, age 72, unknown 18.0
1944 Female, age 72, unknown 17.5
1817 Female, age 42, unknown 16.9
1815 Male, age 53, unknown 16.5
2667 Female, age 75, unknown 15.9
2224 Female, age 72, unknown 14.8
2273 Male, age 74, both hemispheres 14.6
2825 Male, age 18, unknown 12.7
2407 Male, age 75, both hemispheres 11.7
2316 Male, age 76, right hemisphere 10.7
Red nucleus
nTPM: 12.5
1821 Female, age 72, unknown 15.1
2588 Male, age 74, left hemisphere 14.4
2503 Female, age 72, unknown 14.1
1954 Female, age 42, unknown 13.8
2725 Female, age 75, unknown 13.2
1865 Male, age 51, unknown 12.2
2823 Male, age 76, right hemisphere 12.1
2785 Male, age 18, unknown 12.0
1904 Male, age 53, unknown 11.9
2769 Male, age 72, unknown 11.0
2227 Male, age 72, unknown 10.5
2584 Male, age 75, left hemisphere 9.9
Substantia nigra
nTPM: 15.4
2241 Male, age 72, unknown 19.1
1916 Female, age 42, unknown 18.8
1941 Male, age 53, unknown 17.4
1889 Female, age 72, unknown 16.5
2665 Male, age 74, both hemispheres 16.5
1851 Male, age 51, unknown 15.7
2409 Female, age 72, unknown 13.5
2699 Male, age 18, unknown 13.4
2590 Female, age 75, unknown 13.0
2583 Male, age 75, right hemisphere 10.1
Superior colliculus
nTPM: 13.1
2087 Female, age 72, unknown 15.9
2261 Male, age 18, unknown 15.2
1895 Male, age 76, right hemisphere 15.0
2587 Male, age 74, left hemisphere 14.2
1839 Male, age 51, unknown 13.6
2668 Female, age 75, unknown 12.2
1913 Female, age 42, unknown 12.1
1796 Male, age 53, unknown 11.7
1995 Male, age 72, unknown 10.9
2664 Male, age 75, both hemispheres 9.6
Ventral tegmental area
nTPM: 13.8
2218 Male, age 76, both hemispheres 16.2
1915 Female, age 42, unknown 15.5
2410 Female, age 72, unknown 14.3
2223 Female, age 72, unknown 12.8
1942 Male, age 51, unknown 12.6
2021 Male, age 53, unknown 11.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 29.3
Min nTPM: 4.9
Std nTPM: 3.4
Median nTPM: 11.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 21.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 18.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 18.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 16.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 16.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.4
FF:10158-103A5 76 years, female 16.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 10.0
Sample A Male 11.0
Sample B Male 10.5
Sample C Female 10.0
Sample D Female 11.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69116990 Antisense, RP_050321_01_E06, Mouse strain C57BL/6J (56 days, male) 2.0
70813269 Antisense, RP_050712_03_E07, Mouse strain C57BL/6J (56 days, male) 0.0

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