MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.5 nTPM
HPA Brain:39.6 nTPM
GTEx:19.5 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:25.3 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.5
2586 Male, age 75, left hemisphere 55.5
2019 Male, age 18, unknown 42.8
2411 Female, age 72, unknown 39.4
2828 Female, age 72, unknown 39.4
1827 Male, age 72, unknown 37.1
1870 Female, age 42, unknown 35.2
2666 Male, age 74, left hemisphere 35.2
1830 Male, age 51, unknown 34.8
1833 Male, age 53, unknown 33.8
2219 Male, age 76, both hemispheres 31.5
Dorsal raphe nucleus
nTPM: 32.3
2750 Male, age 76, both hemispheres 35.9
2298 Female, age 72, unknown 32.1
2047 Male, age 72, unknown 31.7
2016 Female, age 72, unknown 31.6
1828 Male, age 53, unknown 30.5
Inferior colliculus
nTPM: 28.4
1890 Male, age 53, unknown 30.2
2849 Male, age 72, unknown 28.1
1848 Female, age 42, unknown 27.9
2097 Female, age 72, unknown 27.3
Median raphe nucleus
nTPM: 29.1
2220 Male, age 76, midline 29.1
Periaquaductal grey, anterior
nTPM: 36.2
2502 Female, age 75, unknown 37.3
1795 Male, age 51, unknown 36.2
1947 Male, age 18, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 25.4
2464 Female, age 72, unknown 28.9
1840 Male, age 53, unknown 25.7
1831 Male, age 72, unknown 25.6
2850 Male, age 76, both hemispheres 21.6
Periaquaductal grey, lateral
nTPM: 28.4
2272 Male, age 74, both hemispheres 33.4
2053 Male, age 18, unknown 29.2
2140 Male, age 76, both hemispheres 22.7
Pretectal area
nTPM: 35.3
2007 Male, age 72, unknown 45.8
1816 Male, age 51, unknown 42.1
1817 Female, age 42, unknown 40.3
1815 Male, age 53, unknown 39.0
2407 Male, age 75, both hemispheres 37.3
1944 Female, age 72, unknown 35.0
2316 Male, age 76, right hemisphere 32.0
2825 Male, age 18, unknown 30.4
2667 Female, age 75, unknown 29.6
2273 Male, age 74, both hemispheres 28.8
2224 Female, age 72, unknown 27.5
Red nucleus
nTPM: 39.6
2785 Male, age 18, unknown 46.0
2584 Male, age 75, left hemisphere 45.4
2588 Male, age 74, left hemisphere 45.4
2503 Female, age 72, unknown 41.8
2769 Male, age 72, unknown 40.5
1904 Male, age 53, unknown 39.0
2227 Male, age 72, unknown 38.9
1865 Male, age 51, unknown 37.4
2725 Female, age 75, unknown 36.2
1821 Female, age 72, unknown 35.8
1954 Female, age 42, unknown 34.6
2823 Male, age 76, right hemisphere 34.2
Substantia nigra
nTPM: 36.3
2583 Male, age 75, right hemisphere 47.1
1916 Female, age 42, unknown 44.0
2590 Female, age 75, unknown 39.1
1851 Male, age 51, unknown 38.4
1941 Male, age 53, unknown 37.8
1889 Female, age 72, unknown 35.4
2665 Male, age 74, both hemispheres 33.3
2409 Female, age 72, unknown 30.7
2699 Male, age 18, unknown 29.8
2241 Male, age 72, unknown 27.2
Superior colliculus
nTPM: 35.7
2668 Female, age 75, unknown 40.5
2664 Male, age 75, both hemispheres 38.9
1796 Male, age 53, unknown 37.4
2261 Male, age 18, unknown 36.7
1913 Female, age 42, unknown 36.6
1995 Male, age 72, unknown 36.5
2587 Male, age 74, left hemisphere 36.4
1839 Male, age 51, unknown 32.4
2087 Female, age 72, unknown 32.2
1895 Male, age 76, right hemisphere 29.6
Ventral tegmental area
nTPM: 35.3
2410 Female, age 72, unknown 39.7
2223 Female, age 72, unknown 36.5
1915 Female, age 42, unknown 36.1
1942 Male, age 51, unknown 34.3
2218 Male, age 76, both hemispheres 33.5
2021 Male, age 53, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.5
Samples: 139

Max nTPM: 37.5
Min nTPM: 10.0
Std nTPM: 5.0
Median nTPM: 19.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 37.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 33.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 28.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 27.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 27.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.7
Samples: 4

Max nTPM: 46.2
Min nTPM: 28.7
Sample A Female 46.2
Sample B Female 28.7
Sample C Male 39.5
Sample D Male 44.2
Midbrain
nTPM: 41.8
Samples: 4

Max nTPM: 55.2
Min nTPM: 33.7
Sample A Female 55.2
Sample B Female 36.7
Sample C Male 41.7
Sample D Male 33.7
Periaqueductal gray
nTPM: 30.9
Samples: 3

Max nTPM: 33.6
Min nTPM: 28.6
Sample B Female 33.6
Sample C Male 30.5
Sample D Male 28.6
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 45.9
Min nTPM: 29.1
Sample A Female 45.9
Sample B Female 29.1
Sample C Male 42.4
Sample D Male 43.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 26.4
Min nTPM: 24.2
Sample A Male 26.4
Sample B Male 24.2
Sample C Female 24.7
Sample D Female 25.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68151349 Antisense, RP_041116_01_A07, Mouse strain C57BL/6J (56 days, male) 2.7

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