MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5493.0 nTPM
HPA Brain:4002.8 nTPM
GTEx:5493.0 nTPM
FANTOM5:211.9 Scaled Tags Per Million
Mouse:2960.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 4002.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4002.8
2666 Male, age 74, left hemisphere 5567.5
2586 Male, age 75, left hemisphere 5088.7
1870 Female, age 42, unknown 4493.0
2828 Female, age 72, unknown 4475.4
1830 Male, age 51, unknown 4173.7
1833 Male, age 53, unknown 3866.6
2411 Female, age 72, unknown 3786.8
2019 Male, age 18, unknown 3348.7
1827 Male, age 72, unknown 3092.2
2219 Male, age 76, both hemispheres 2135.0
Dorsal raphe nucleus
nTPM: 3410.3
2750 Male, age 76, both hemispheres 3743.5
2016 Female, age 72, unknown 3580.2
1828 Male, age 53, unknown 3517.2
2298 Female, age 72, unknown 3313.2
2047 Male, age 72, unknown 2897.4
Inferior colliculus
nTPM: 3392.8
2849 Male, age 72, unknown 3904.0
1848 Female, age 42, unknown 3402.5
1890 Male, age 53, unknown 3279.6
2097 Female, age 72, unknown 2985.3
Median raphe nucleus
nTPM: 3815.1
2220 Male, age 76, midline 3815.1
Periaquaductal grey, anterior
nTPM: 3098.3
2502 Female, age 75, unknown 3837.1
1795 Male, age 51, unknown 2924.2
1947 Male, age 18, unknown 2533.6
Periaquaductal grey, dorsal
nTPM: 3286.6
2850 Male, age 76, both hemispheres 3871.3
2464 Female, age 72, unknown 3459.3
1831 Male, age 72, unknown 3144.9
1840 Male, age 53, unknown 2671.1
Periaquaductal grey, lateral
nTPM: 3010.9
2140 Male, age 76, both hemispheres 3581.1
2053 Male, age 18, unknown 2976.1
2272 Male, age 74, both hemispheres 2475.5
Pretectal area
nTPM: 3101.5
2825 Male, age 18, unknown 3578.4
2407 Male, age 75, both hemispheres 3575.8
1817 Female, age 42, unknown 3472.3
1815 Male, age 53, unknown 3446.6
2667 Female, age 75, unknown 3398.8
2224 Female, age 72, unknown 3355.2
2007 Male, age 72, unknown 2838.5
1816 Male, age 51, unknown 2788.2
2316 Male, age 76, right hemisphere 2696.0
1944 Female, age 72, unknown 2641.4
2273 Male, age 74, both hemispheres 2324.9
Red nucleus
nTPM: 3998.5
2227 Male, age 72, unknown 4722.6
1865 Male, age 51, unknown 4697.6
2584 Male, age 75, left hemisphere 4599.8
2769 Male, age 72, unknown 4492.6
2785 Male, age 18, unknown 4483.4
1904 Male, age 53, unknown 4366.6
1954 Female, age 42, unknown 3895.0
1821 Female, age 72, unknown 3890.1
2503 Female, age 72, unknown 3561.2
2823 Male, age 76, right hemisphere 3516.4
2725 Female, age 75, unknown 2930.8
2588 Male, age 74, left hemisphere 2825.7
Substantia nigra
nTPM: 3039.4
2699 Male, age 18, unknown 4054.5
1889 Female, age 72, unknown 3377.4
1851 Male, age 51, unknown 3310.7
1916 Female, age 42, unknown 3249.0
1941 Male, age 53, unknown 3231.5
2665 Male, age 74, both hemispheres 3224.6
2583 Male, age 75, right hemisphere 2730.6
2241 Male, age 72, unknown 2696.5
2590 Female, age 75, unknown 2344.5
2409 Female, age 72, unknown 2174.6
Superior colliculus
nTPM: 3855.9
1913 Female, age 42, unknown 5266.1
2664 Male, age 75, both hemispheres 4749.7
2668 Female, age 75, unknown 4641.4
1995 Male, age 72, unknown 4358.5
2587 Male, age 74, left hemisphere 4155.2
1796 Male, age 53, unknown 3573.1
1839 Male, age 51, unknown 3254.2
2261 Male, age 18, unknown 2923.9
2087 Female, age 72, unknown 2901.3
1895 Male, age 76, right hemisphere 2735.6
Ventral tegmental area
nTPM: 3545.7
2223 Female, age 72, unknown 5725.2
1915 Female, age 42, unknown 3553.5
2021 Male, age 53, unknown 3256.9
2218 Male, age 76, both hemispheres 3215.3
1942 Male, age 51, unknown 3198.0
2410 Female, age 72, unknown 2325.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5493.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5493.0
Samples: 183

Max nTPM: 16155.3
Min nTPM: 1941.4
Std nTPM: 2584.9
Median nTPM: 4903.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 16155.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 15523.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 14604.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14305.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 13038.3
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 11978.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 11869.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 11542.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 11404.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 10293.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9990.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 211.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.9
FF:10158-103A5 76 years, female 211.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2960.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2960.5
Samples: 4

Max nTPM: 3287.3
Min nTPM: 2813.4
Sample A Male 3287.3
Sample B Male 2863.5
Sample C Female 2813.4
Sample D Female 2877.7

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